c2pfam

AT5G20885.1 :

Domain Description Evalue Bits GA Start End
DUF1644 Protein of unknown function (DUF1644) 0.00099 10 25.00 39 111
Auto_anti-p27 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) 0.046 5 22.20 76 85
Prok-RING_1 Prokaryotic RING finger family 1 0.00011 13 29.10 78 112
zf-rbx1 RING-H2 zinc finger domain 3E-08 24 31.00 79 139
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.1E-05 15 21.40 79 119
Zf_RING KIAA1045 RING finger 0.00048 11 30.80 79 112
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 0.002 9 27.00 80 142
zf-RING_2 Ring finger domain 2.1E-12 38 27.30 80 139
Rad50_zn_hook Rad50 zinc hook motif 0.37 1 21.60 80 99
Baculo_RING Baculovirus U-box/Ring-like domain 0.0002 12 21.20 80 113
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 5.8E-05 13 27.30 80 117
FANCL_C FANCL C-terminal domain 0.0012 10 20.70 81 116
RINGv RING-variant domain 0.00088 10 21.60 82 138
Prok-RING_4 Prokaryotic RING finger family 4 0.0068 7 27.00 82 116
zf-RING_11 RING-like zinc finger 1.2E-12 38 27.00 82 110
PHD PHD-finger 0.054 4 27.90 82 114
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.2E-09 29 21.00 82 138
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 8.7E-09 26 27.00 82 115
zf-RING_UBOX RING-type zinc-finger 1.4E-07 22 25.20 82 136
zf-RING_5 zinc-RING finger domain 1.8E-06 18 27.90 82 140
zf-Nse Zinc-finger of the MIZ type in Nse subunit 2.6E-05 15 20.70 99 138
DUF1644 Protein of unknown function (DUF1644) 0.035 5 25.00 127 141
Rad50_zn_hook Rad50 zinc hook motif 0.0014 9 21.60 129 142
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 1 0 27.30 131 142
Prok-RING_4 Prokaryotic RING finger family 4 0.0085 7 27.00 131 141
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 0.044 4 27.00 132 147
Prok-RING_1 Prokaryotic RING finger family 1 0.19 2 29.10 133 141
Prok-RING_1 Prokaryotic RING finger family 1 0.098 3 29.10 133 142
Auto_anti-p27 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) 0.0069 7 22.20 134 145

176

DUF1644
Auto_anti-p27
Prok-RING_1
zf-rbx1
zf-ANAPC11
Zf_RING
zf-C3HC4_3
zf-RING_2
Rad50_zn_hook
Baculo_RING
Zn_ribbon_17
FANCL_C
RINGv
Prok-RING_4
zf-RING_11
PHD
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
zf-Nse
DUF1644
Rad50_zn_hook
Zn_ribbon_17
Prok-RING_4
zf-C3HC4_2
Prok-RING_1
Prok-RING_1
Auto_anti-p27

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Zn_ribbon_17

Prok-RING_4

zf-RING_11

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

RINGv

Baculo_RING

zf-RING_5

zf-ANAPC11

zf-C3HC4_2

Rad50_zn_hook
12152085 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 2002;418:562-566.
12151226 Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 2002;27:410-418.

DUF1644

zf-RING_2

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

Auto_anti-p27
9486406 cDNA cloning of a novel autoantigen targeted by a minor subset of anti-centromere antibodies. Clin Exp Immunol 1998;111:372-376.

Zf_RING

zf-C3HC4_3

zf-rbx1

zf-RING_UBOX

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
DUF1644	Protein of unknown function (DUF1644)	0.00099	10	25.00	39	111
Auto_anti-p27	Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)	0.046	5	22.20	76	85
Prok-RING_1	Prokaryotic RING finger family 1	0.00011	13	29.10	78	112
zf-rbx1	RING-H2 zinc finger domain	3E-08	24	31.00	79	139
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.1E-05	15	21.40	79	119
Zf_RING	KIAA1045 RING finger	0.00048	11	30.80	79	112
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	0.002	9	27.00	80	142
zf-RING_2	Ring finger domain	2.1E-12	38	27.30	80	139
Rad50_zn_hook	Rad50 zinc hook motif	0.37	1	21.60	80	99
Baculo_RING	Baculovirus U-box/Ring-like domain	0.0002	12	21.20	80	113
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	5.8E-05	13	27.30	80	117
FANCL_C	FANCL C-terminal domain	0.0012	10	20.70	81	116
RINGv	RING-variant domain	0.00088	10	21.60	82	138
Prok-RING_4	Prokaryotic RING finger family 4	0.0068	7	27.00	82	116
zf-RING_11	RING-like zinc finger	1.2E-12	38	27.00	82	110
PHD	PHD-finger	0.054	4	27.90	82	114
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	1.2E-09	29	21.00	82	138
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	8.7E-09	26	27.00	82	115
zf-RING_UBOX	RING-type zinc-finger	1.4E-07	22	25.20	82	136
zf-RING_5	zinc-RING finger domain	1.8E-06	18	27.90	82	140
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	2.6E-05	15	20.70	99	138
DUF1644	Protein of unknown function (DUF1644)	0.035	5	25.00	127	141
Rad50_zn_hook	Rad50 zinc hook motif	0.0014	9	21.60	129	142
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	1	0	27.30	131	142
Prok-RING_4	Prokaryotic RING finger family 4	0.0085	7	27.00	131	141
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	0.044	4	27.00	132	147
Prok-RING_1	Prokaryotic RING finger family 1	0.19	2	29.10	133	141
Prok-RING_1	Prokaryotic RING finger family 1	0.098	3	29.10	133	142
Auto_anti-p27	Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)	0.0069	7	22.20	134	145