c2pfam

AT5G20910.1 :

Domain Description Evalue Bits GA Start End
Sec2p GDP/GTP exchange factor Sec2p 1.3E-05 15 22.30 83 117
zf-RING_5 zinc-RING finger domain 0.095 3 27.90 222 234
zf-HC5HC2H PHD-like zinc-binding domain 0.00018 12 29.10 223 258
zf-HC5HC2H_2 PHD-zinc-finger like domain 0.00016 12 27.00 225 257
FANCL_C FANCL C-terminal domain 0.0088 7 20.70 227 265
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 0.00029 11 27.30 228 268
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 1.5E-06 18 27.00 228 274
zf-RING_5 zinc-RING finger domain 0.00025 11 27.90 229 272
zf-RING_2 Ring finger domain 7.7E-15 45 27.30 229 271
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.5E-10 31 27.00 229 270
zf-RING_11 RING-like zinc finger 5.4E-10 29 27.00 229 257
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 3.5E-08 24 21.00 230 270
zf-rbx1 RING-H2 zinc finger domain 8.1E-07 20 31.00 230 271
zf-RING_UBOX RING-type zinc-finger 2.8E-06 18 25.20 230 268
Prok-RING_4 Prokaryotic RING finger family 4 7.1E-05 13 27.00 230 276
zf-RING-like RING-like domain 0.00016 12 21.60 230 270
PHD PHD-finger 0.0056 7 27.90 230 271
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.9E-05 15 21.40 247 274
Rad50_zn_hook Rad50 zinc hook motif 0.00013 12 21.60 263 280
zf-RING_UBOX RING-type zinc-finger 0.082 3 25.20 267 274

310

Sec2p
zf-RING_5
zf-HC5HC2H
zf-HC5HC2H_2
FANCL_C
Zn_ribbon_17
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
Prok-RING_4
zf-RING-like
PHD
zf-ANAPC11
Rad50_zn_hook
zf-RING_UBOX

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-HC5HC2H_2

zf-HC5HC2H

zf-ANAPC11

Prok-RING_4

zf-RING_UBOX

Rad50_zn_hook
12152085 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 2002;418:562-566.
12151226 Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 2002;27:410-418.

Sec2p
9199166 Sec2p mediates nucleotide exchange on Sec4p and is involved in polarized delivery of post-Golgi vesicles. J Cell Biol 1997;137:1495-1509.

zf-RING_5

zf-RING_2

zf-rbx1

zf-RING-like

zf-RING_11

zf-C3HC4_3

zf-C3HC4_2

Zn_ribbon_17

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
Sec2p	GDP/GTP exchange factor Sec2p	1.3E-05	15	22.30	83	117
zf-RING_5	zinc-RING finger domain	0.095	3	27.90	222	234
zf-HC5HC2H	PHD-like zinc-binding domain	0.00018	12	29.10	223	258
zf-HC5HC2H_2	PHD-zinc-finger like domain	0.00016	12	27.00	225	257
FANCL_C	FANCL C-terminal domain	0.0088	7	20.70	227	265
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	0.00029	11	27.30	228	268
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	1.5E-06	18	27.00	228	274
zf-RING_5	zinc-RING finger domain	0.00025	11	27.90	229	272
zf-RING_2	Ring finger domain	7.7E-15	45	27.30	229	271
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.5E-10	31	27.00	229	270
zf-RING_11	RING-like zinc finger	5.4E-10	29	27.00	229	257
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	3.5E-08	24	21.00	230	270
zf-rbx1	RING-H2 zinc finger domain	8.1E-07	20	31.00	230	271
zf-RING_UBOX	RING-type zinc-finger	2.8E-06	18	25.20	230	268
Prok-RING_4	Prokaryotic RING finger family 4	7.1E-05	13	27.00	230	276
zf-RING-like	RING-like domain	0.00016	12	21.60	230	270
PHD	PHD-finger	0.0056	7	27.90	230	271
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.9E-05	15	21.40	247	274
Rad50_zn_hook	Rad50 zinc hook motif	0.00013	12	21.60	263	280
zf-RING_UBOX	RING-type zinc-finger	0.082	3	25.20	267	274