c2pfam

AT5G22750.1 :

Domain Description Evalue Bits GA Start End
HIRAN HIRAN domain 2.4E-19 59 20.80 114 223
ResIII Type III restriction enzyme, res subunit 5E-07 20 20.90 346 604
SNF2_N SNF2 family N-terminal domain 0 294 20.10 351 739
DEAD DEAD/DEAH box helicase 5.3E-07 20 20.60 419 584
zf-RING_4 RING/Ubox like zinc-binding domain 0.47 1 27.00 786 798
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.1E-05 15 21.40 787 839
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 1.4E-12 38 27.00 791 839
zf-Di19 Drought induced 19 protein (Di19), zinc-binding 0.22 2 27.50 792 802
zf-Di19 Drought induced 19 protein (Di19), zinc-binding 0.0025 8 27.50 793 839
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 5.7E-12 36 27.00 793 833
zf-RING_2 Ring finger domain 2.1E-11 34 27.30 793 834
zf-RING_5 zinc-RING finger domain 3.2E-08 24 27.90 793 835
Prok-RING_4 Prokaryotic RING finger family 4 3.1E-10 30 27.00 794 840
zf-C3HC4_4 zinc finger of C3HC4-type, RING 7.4E-09 26 30.00 794 833
zf-RING_4 RING/Ubox like zinc-binding domain 1.2E-05 15 27.00 794 835
zf-RING_UBOX RING-type zinc-finger 1.1E-10 32 25.20 794 831
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2E-12 37 21.00 794 833
zf-RING_UBOX RING-type zinc-finger 0.83 0 25.20 830 837
Helicase_C Helicase conserved C-terminal domain 6.8E-19 58 20.90 864 976

1029

HIRAN
ResIII
SNF2_N
DEAD
zf-RING_4
zf-ANAPC11
zf-C3HC4_3
zf-Di19
zf-Di19
zf-C3HC4_2
zf-RING_2
zf-RING_5
Prok-RING_4
zf-C3HC4_4
zf-RING_4
zf-RING_UBOX
zf-C3HC4
zf-RING_UBOX
Helicase_C

References:

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

HIRAN
16627993 The HIRAN domain and recruitment of chromatin remodeling and repair activities to damaged DNA. Cell Cycle. 2006;5:775-782.

SNF2_N

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-Di19

zf-ANAPC11

Helicase_C

zf-C3HC4_2

zf-RING_5

zf-RING_4

zf-RING_2

zf-C3HC4_4

zf-C3HC4_3

Prok-RING_4

zf-RING_UBOX

ResIII

Domain	Description	Evalue	Bits	GA	Start	End
HIRAN	HIRAN domain	2.4E-19	59	20.80	114	223
ResIII	Type III restriction enzyme, res subunit	5E-07	20	20.90	346	604
SNF2_N	SNF2 family N-terminal domain	0	294	20.10	351	739
DEAD	DEAD/DEAH box helicase	5.3E-07	20	20.60	419	584
zf-RING_4	RING/Ubox like zinc-binding domain	0.47	1	27.00	786	798
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.1E-05	15	21.40	787	839
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	1.4E-12	38	27.00	791	839
zf-Di19	Drought induced 19 protein (Di19), zinc-binding	0.22	2	27.50	792	802
zf-Di19	Drought induced 19 protein (Di19), zinc-binding	0.0025	8	27.50	793	839
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	5.7E-12	36	27.00	793	833
zf-RING_2	Ring finger domain	2.1E-11	34	27.30	793	834
zf-RING_5	zinc-RING finger domain	3.2E-08	24	27.90	793	835
Prok-RING_4	Prokaryotic RING finger family 4	3.1E-10	30	27.00	794	840
zf-C3HC4_4	zinc finger of C3HC4-type, RING	7.4E-09	26	30.00	794	833
zf-RING_4	RING/Ubox like zinc-binding domain	1.2E-05	15	27.00	794	835
zf-RING_UBOX	RING-type zinc-finger	1.1E-10	32	25.20	794	831
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	2E-12	37	21.00	794	833
zf-RING_UBOX	RING-type zinc-finger	0.83	0	25.20	830	837
Helicase_C	Helicase conserved C-terminal domain	6.8E-19	58	20.90	864	976