c2pfam

AT1G24290.1 :

Domain Description Evalue Bits GA Start End
UBA UBA/TS-N domain 3.9E-08 24 21.10 2 33
CID CID domain 0.00071 11 23.90 23 59
TIP49 TIP49 C-terminus 0.00024 12 23.80 97 160
RuvB_N Holliday junction DNA helicase ruvB N-terminus 4.4E-13 40 20.00 107 231
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.071 4 27.00 126 160
AAA_16 AAA ATPase domain 4.1E-06 18 32.60 127 164
ATPase_2 ATPase domain predominantly from Archaea 0.00037 12 33.20 129 186
AAA_11 AAA domain 8.2E-05 14 27.00 129 162
AAA_19 AAA domain 0.00028 12 25.10 130 210
TniB Bacterial TniB protein 0.0011 9 20.10 130 159
ResIII Type III restriction enzyme, res subunit 0.0065 8 20.90 132 160
Sigma54_activat Sigma-54 interaction domain 0.0049 8 20.20 134 164
DUF815 Protein of unknown function (DUF815) 2.2E-05 15 20.10 137 214
IstB_IS21 IstB-like ATP binding protein 1.6E-05 16 24.10 139 223
AAA_2 AAA domain (Cdc48 subfamily) 2.8E-05 15 20.60 139 227
AAA_22 AAA domain 6.9E-07 21 27.00 139 216
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00031 11 20.30 139 159
AAA_7 P-loop containing dynein motor region 4.9E-07 21 25.80 139 210
Parvo_NS1 Parvovirus non-structural protein NS1 0.00027 11 20.00 139 162
AAA_24 AAA domain 3.5E-05 15 27.00 139 164
AAA_28 AAA domain 0.00049 12 27.00 140 158
AAA_33 AAA domain 0.00026 12 27.00 140 176
AAA_5 AAA domain (dynein-related subfamily) 2.2E-08 25 20.80 140 230
AAA ATPase family associated with various cellular activities (AAA) 1.2E-18 59 20.80 140 251
RNA_helicase RNA helicase 0.0002 13 21.50 140 161
Roc Ras of Complex, Roc, domain of DAPkinase 0.00036 12 27.00 140 184
AAA_18 AAA domain 0.00012 14 29.40 140 161
AAA_14 AAA domain 5.9E-06 18 27.00 141 257
Sigma54_activ_2 Sigma-54 interaction domain 1.1E-05 17 25.00 141 225
AAA_30 AAA domain 0.00061 11 27.00 141 231
DUF2075 Uncharacterized conserved protein (DUF2075) 0.00031 11 20.30 143 216
DNA_pol3_delta2 DNA polymerase III, delta subunit 4.3E-05 15 27.00 177 257
AAA_16 AAA ATPase domain 0.036 6 32.60 180 219
ResIII Type III restriction enzyme, res subunit 0.0022 9 20.90 190 213
TniB Bacterial TniB protein 0.48 1 20.10 194 221
Sigma54_activat Sigma-54 interaction domain 5E-06 17 20.20 194 237
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0032 8 20.30 199 231
AAA_assoc_2 AAA C-terminal domain 1.3E-29 94 34.30 280 358
DUF2075 Uncharacterized conserved protein (DUF2075) 0.24 2 20.30 347 378
MgsA_C MgsA AAA+ ATPase C terminal 0 197 21.00 359 510
UBA UBA/TS-N domain 0.22 3 21.10 359 369

525

UBA
CID
TIP49
RuvB_N
DNA_pol3_delta2
AAA_16
ATPase_2
AAA_11
AAA_19
TniB
ResIII
Sigma54_activat
DUF815
IstB_IS21
AAA_2
AAA_22
Mg_chelatase
AAA_7
Parvo_NS1
AAA_24
AAA_28
AAA_33
AAA_5
AAA
RNA_helicase
Roc
AAA_18
AAA_14
Sigma54_activ_2
AAA_30
DUF2075
DNA_pol3_delta2
AAA_16
ResIII
TniB
Sigma54_activat
Mg_chelatase
AAA_assoc_2
DUF2075
MgsA_C
UBA

References:

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

DUF2075

ResIII

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

ATPase_2

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

DUF815

DNA_pol3_delta2

AAA_7

Roc

AAA_33

AAA_30

AAA_28

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_24

AAA_22

AAA_19

AAA_18

AAA_assoc_2

AAA_16

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

Sigma54_activ_2

AAA_11

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_14

MgsA_C
15743409 Functional overlap between RecA and MgsA (RarA) in the rescue of stalled replication forks in Escherichia coli. Genes Cells. 2005;10:181-191.

Parvo_NS1
8372437 Nuclear targeting of the parvoviral replicator molecule NS1: evidence for self-association prior to nuclear transport. Virology 1993;196:637-651.
9454701 Nonstructural protein-2 and the replication of canine parvovirus. Virology 1998;240:273-281.

CID

UBA
9846873 Structure of a human DNA repair protein UBA domain that interacts with HIV-1 Vpr. Nat Struct Biol 1998;5:1042-1047.
10413400 Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res 1999;9:608-628.
8596629 The structure of the Escherichia coli EF-Tu.EF-Ts complex at 2.5 A resolution. Nature 1996;379:511-518.

Domain	Description	Evalue	Bits	GA	Start	End
UBA	UBA/TS-N domain	3.9E-08	24	21.10	2	33
CID	CID domain	0.00071	11	23.90	23	59
TIP49	TIP49 C-terminus	0.00024	12	23.80	97	160
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	4.4E-13	40	20.00	107	231
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.071	4	27.00	126	160
AAA_16	AAA ATPase domain	4.1E-06	18	32.60	127	164
ATPase_2	ATPase domain predominantly from Archaea	0.00037	12	33.20	129	186
AAA_11	AAA domain	8.2E-05	14	27.00	129	162
AAA_19	AAA domain	0.00028	12	25.10	130	210
TniB	Bacterial TniB protein	0.0011	9	20.10	130	159
ResIII	Type III restriction enzyme, res subunit	0.0065	8	20.90	132	160
Sigma54_activat	Sigma-54 interaction domain	0.0049	8	20.20	134	164
DUF815	Protein of unknown function (DUF815)	2.2E-05	15	20.10	137	214
IstB_IS21	IstB-like ATP binding protein	1.6E-05	16	24.10	139	223
AAA_2	AAA domain (Cdc48 subfamily)	2.8E-05	15	20.60	139	227
AAA_22	AAA domain	6.9E-07	21	27.00	139	216
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00031	11	20.30	139	159
AAA_7	P-loop containing dynein motor region	4.9E-07	21	25.80	139	210
Parvo_NS1	Parvovirus non-structural protein NS1	0.00027	11	20.00	139	162
AAA_24	AAA domain	3.5E-05	15	27.00	139	164
AAA_28	AAA domain	0.00049	12	27.00	140	158
AAA_33	AAA domain	0.00026	12	27.00	140	176
AAA_5	AAA domain (dynein-related subfamily)	2.2E-08	25	20.80	140	230
AAA	ATPase family associated with various cellular activities (AAA)	1.2E-18	59	20.80	140	251
RNA_helicase	RNA helicase	0.0002	13	21.50	140	161
Roc	Ras of Complex, Roc, domain of DAPkinase	0.00036	12	27.00	140	184
AAA_18	AAA domain	0.00012	14	29.40	140	161
AAA_14	AAA domain	5.9E-06	18	27.00	141	257
Sigma54_activ_2	Sigma-54 interaction domain	1.1E-05	17	25.00	141	225
AAA_30	AAA domain	0.00061	11	27.00	141	231
DUF2075	Uncharacterized conserved protein (DUF2075)	0.00031	11	20.30	143	216
DNA_pol3_delta2	DNA polymerase III, delta subunit	4.3E-05	15	27.00	177	257
AAA_16	AAA ATPase domain	0.036	6	32.60	180	219
ResIII	Type III restriction enzyme, res subunit	0.0022	9	20.90	190	213
TniB	Bacterial TniB protein	0.48	1	20.10	194	221
Sigma54_activat	Sigma-54 interaction domain	5E-06	17	20.20	194	237
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0032	8	20.30	199	231
AAA_assoc_2	AAA C-terminal domain	1.3E-29	94	34.30	280	358
DUF2075	Uncharacterized conserved protein (DUF2075)	0.24	2	20.30	347	378
MgsA_C	MgsA AAA+ ATPase C terminal	0	197	21.00	359	510
UBA	UBA/TS-N domain	0.22	3	21.10	359	369