c2pfam

AT5G27420.1 :

Domain Description Evalue Bits GA Start End
zf-Nse Zinc-finger of the MIZ type in Nse subunit 2.3E-06 18 20.70 119 165
Baculo_RING Baculovirus U-box/Ring-like domain 9.8E-05 13 21.20 119 164
FANCL_C FANCL C-terminal domain 2.4E-05 15 20.70 122 160
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 3.7E-07 20 27.00 122 169
zf-RING_5 zinc-RING finger domain 4.3E-08 24 27.90 123 167
zf-RING_2 Ring finger domain 2.5E-16 50 27.30 123 166
zf-RING_11 RING-like zinc finger 9.4E-14 41 27.00 123 152
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 9.7E-11 32 27.00 123 165
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 1.3E-05 15 27.30 123 164
Prok-RING_1 Prokaryotic RING finger family 1 0.00051 10 29.10 123 151
RINGv RING-variant domain 0.00014 12 21.60 124 165
Prok-RING_4 Prokaryotic RING finger family 4 1.6E-05 15 27.00 124 174
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5.2E-10 30 21.00 124 165
zf-RING_UBOX RING-type zinc-finger 6.8E-09 26 25.20 124 163
PHD PHD-finger 0.0012 9 27.90 124 166
zf-RING_4 RING/Ubox like zinc-binding domain 0.0015 9 27.00 124 167
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.9E-08 25 21.40 130 169
zf-rbx1 RING-H2 zinc finger domain 7.9E-10 29 31.00 131 166
zf-RING-like RING-like domain 0.00078 10 21.60 142 165
Prok-RING_1 Prokaryotic RING finger family 1 0.029 5 29.10 160 172

368

zf-Nse
Baculo_RING
FANCL_C
zf-C3HC4_3
zf-RING_5
zf-RING_2
zf-RING_11
zf-C3HC4_2
Zn_ribbon_17
Prok-RING_1
RINGv
Prok-RING_4
zf-C3HC4
zf-RING_UBOX
PHD
zf-RING_4
zf-ANAPC11
zf-rbx1
zf-RING-like
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Zn_ribbon_17

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

RINGv

Baculo_RING

zf-ANAPC11

zf-C3HC4_2

zf-rbx1

zf-RING_5

zf-RING_4

zf-RING_2

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf-RING-like

zf-RING_11

zf-C3HC4_3

Prok-RING_4

zf-RING_UBOX

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	2.3E-06	18	20.70	119	165
Baculo_RING	Baculovirus U-box/Ring-like domain	9.8E-05	13	21.20	119	164
FANCL_C	FANCL C-terminal domain	2.4E-05	15	20.70	122	160
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	3.7E-07	20	27.00	122	169
zf-RING_5	zinc-RING finger domain	4.3E-08	24	27.90	123	167
zf-RING_2	Ring finger domain	2.5E-16	50	27.30	123	166
zf-RING_11	RING-like zinc finger	9.4E-14	41	27.00	123	152
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	9.7E-11	32	27.00	123	165
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	1.3E-05	15	27.30	123	164
Prok-RING_1	Prokaryotic RING finger family 1	0.00051	10	29.10	123	151
RINGv	RING-variant domain	0.00014	12	21.60	124	165
Prok-RING_4	Prokaryotic RING finger family 4	1.6E-05	15	27.00	124	174
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	5.2E-10	30	21.00	124	165
zf-RING_UBOX	RING-type zinc-finger	6.8E-09	26	25.20	124	163
PHD	PHD-finger	0.0012	9	27.90	124	166
zf-RING_4	RING/Ubox like zinc-binding domain	0.0015	9	27.00	124	167
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.9E-08	25	21.40	130	169
zf-rbx1	RING-H2 zinc finger domain	7.9E-10	29	31.00	131	166
zf-RING-like	RING-like domain	0.00078	10	21.60	142	165
Prok-RING_1	Prokaryotic RING finger family 1	0.029	5	29.10	160	172