c2pfam

AT5G27460.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.0065 6 30.00 80 104
MRP-S27 Mitochondrial 28S ribosomal protein S27 1.1E-05 14 25.90 84 204
PPR_3 Pentatricopeptide repeat domain 0.82 -1 25.00 98 109
PPR_long Pentacotripeptide-repeat region of PRORP 0.00071 8 27.00 145 201
TPR_19 Tetratricopeptide repeat 0.015 5 25.00 145 169
TPR_14 Tetratricopeptide repeat 0.88 0 23.50 146 168
PPR_3 Pentatricopeptide repeat domain 0.26 1 25.00 146 168
PPR PPR repeat 1.8E-05 14 25.00 146 173
PPR_2 PPR repeat family 0.0042 7 30.00 149 169
TPR_2 Tetratricopeptide repeat 0.43 1 22.40 152 168
PPR_1 PPR repeat 0.13 1 23.80 153 168
PPR_3 Pentatricopeptide repeat domain 2.5E-06 17 25.00 169 223
PPR_2 PPR repeat family 1.2E-07 21 30.00 181 224
PPR PPR repeat 0.00085 9 25.00 181 208
PPR PPR repeat 0.00059 10 25.00 215 241
TPR_2 Tetratricopeptide repeat 0.011 6 22.40 252 275
PPR PPR repeat 0.044 4 25.00 253 274
TPR_19 Tetratricopeptide repeat 0.036 4 25.00 254 277
TPR_14 Tetratricopeptide repeat 0.31 2 23.50 255 286
PPR_3 Pentatricopeptide repeat domain 0.22 1 25.00 282 304
PPR PPR repeat 0.27 1 25.00 290 308
PPR_3 Pentatricopeptide repeat domain 0.0041 7 25.00 317 344
PPR_2 PPR repeat family 0.0003 10 30.00 320 344
PPR PPR repeat 7.3E-06 16 25.00 322 346
PPR_1 PPR repeat 0.00099 8 23.80 322 346
TPR_14 Tetratricopeptide repeat 0.023 5 23.50 326 348
PPR_long Pentacotripeptide-repeat region of PRORP 0.0013 7 27.00 329 442
TPR_2 Tetratricopeptide repeat 0.077 3 22.40 329 343
TPR_19 Tetratricopeptide repeat 0.049 4 25.00 330 374
PPR_3 Pentatricopeptide repeat domain 7.8E-05 12 25.00 340 397
PPR_2 PPR repeat family 4.7E-06 16 30.00 354 398
PPR PPR repeat 5.6E-06 16 25.00 358 384
PPR_1 PPR repeat 0.2 1 23.80 358 376
PPR_1 PPR repeat 0.1 2 23.80 384 410
PPR_2 PPR repeat family 0.0008 9 30.00 387 413
PPR PPR repeat 0.0069 6 25.00 391 411
PPR_long Pentacotripeptide-repeat region of PRORP 0.0049 5 27.00 403 459
TPR_14 Tetratricopeptide repeat 0.015 6 23.50 431 470
PPR_2 PPR repeat family 0.92 -1 30.00 437 456

491

PPR_2
MRP-S27
PPR_3
PPR_long
TPR_19
TPR_14
PPR_3
PPR
PPR_2
TPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR
TPR_2
PPR
TPR_19
TPR_14
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_1
TPR_14
PPR_long
TPR_2
TPR_19
PPR_3
PPR_2
PPR
PPR_1
PPR_1
PPR_2
PPR
PPR_long
TPR_14
PPR_2

References:

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_19

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.0065	6	30.00	80	104
MRP-S27	Mitochondrial 28S ribosomal protein S27	1.1E-05	14	25.90	84	204
PPR_3	Pentatricopeptide repeat domain	0.82	-1	25.00	98	109
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00071	8	27.00	145	201
TPR_19	Tetratricopeptide repeat	0.015	5	25.00	145	169
TPR_14	Tetratricopeptide repeat	0.88	0	23.50	146	168
PPR_3	Pentatricopeptide repeat domain	0.26	1	25.00	146	168
PPR	PPR repeat	1.8E-05	14	25.00	146	173
PPR_2	PPR repeat family	0.0042	7	30.00	149	169
TPR_2	Tetratricopeptide repeat	0.43	1	22.40	152	168
PPR_1	PPR repeat	0.13	1	23.80	153	168
PPR_3	Pentatricopeptide repeat domain	2.5E-06	17	25.00	169	223
PPR_2	PPR repeat family	1.2E-07	21	30.00	181	224
PPR	PPR repeat	0.00085	9	25.00	181	208
PPR	PPR repeat	0.00059	10	25.00	215	241
TPR_2	Tetratricopeptide repeat	0.011	6	22.40	252	275
PPR	PPR repeat	0.044	4	25.00	253	274
TPR_19	Tetratricopeptide repeat	0.036	4	25.00	254	277
TPR_14	Tetratricopeptide repeat	0.31	2	23.50	255	286
PPR_3	Pentatricopeptide repeat domain	0.22	1	25.00	282	304
PPR	PPR repeat	0.27	1	25.00	290	308
PPR_3	Pentatricopeptide repeat domain	0.0041	7	25.00	317	344
PPR_2	PPR repeat family	0.0003	10	30.00	320	344
PPR	PPR repeat	7.3E-06	16	25.00	322	346
PPR_1	PPR repeat	0.00099	8	23.80	322	346
TPR_14	Tetratricopeptide repeat	0.023	5	23.50	326	348
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0013	7	27.00	329	442
TPR_2	Tetratricopeptide repeat	0.077	3	22.40	329	343
TPR_19	Tetratricopeptide repeat	0.049	4	25.00	330	374
PPR_3	Pentatricopeptide repeat domain	7.8E-05	12	25.00	340	397
PPR_2	PPR repeat family	4.7E-06	16	30.00	354	398
PPR	PPR repeat	5.6E-06	16	25.00	358	384
PPR_1	PPR repeat	0.2	1	23.80	358	376
PPR_1	PPR repeat	0.1	2	23.80	384	410
PPR_2	PPR repeat family	0.0008	9	30.00	387	413
PPR	PPR repeat	0.0069	6	25.00	391	411
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0049	5	27.00	403	459
TPR_14	Tetratricopeptide repeat	0.015	6	23.50	431	470
PPR_2	PPR repeat family	0.92	-1	30.00	437	456