c2pfam

AT5G27540.1 :

Domain Description Evalue Bits GA Start End
TniB Bacterial TniB protein 0.0082 6 20.10 11 90
Arf ADP-ribosylation factor family 0.0054 7 20.30 14 168
AAA_29 P-loop containing region of AAA domain 0.00064 10 27.00 16 38
AAA_24 AAA domain 0.0032 8 27.00 17 36
MCM MCM2/3/5 family 0.018 5 25.20 18 37
ABC_tran ABC transporter 0.0073 8 23.10 18 36
AAA_16 AAA ATPase domain 0.00048 11 32.60 18 38
SRPRB Signal recognition particle receptor beta subunit 0.31 1 20.50 19 44
Ras Ras family 1.3E-18 58 20.80 19 181
Roc Ras of Complex, Roc, domain of DAPkinase 2E-08 25 27.00 19 131
MMR_HSR1 GTPase of unknown function 0.0014 10 24.50 19 98
Dynamin_N Dynamin family 0.0061 7 21.00 20 36
ATPase_2 ATPase domain predominantly from Archaea 0.53 1 33.20 20 36
RsgA_GTPase RsgA GTPase 0.018 6 30.00 20 35
RNA_helicase RNA helicase 0.085 4 21.50 20 34
AAA_22 AAA domain 0.014 6 27.00 20 35
AAA_23 AAA domain 0.19 3 27.00 21 34
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.69 0 27.00 21 36
RsgA_GTPase RsgA GTPase 0.21 2 30.00 84 169
EF-hand_7 EF-hand domain pair 0.00013 13 30.00 202 229
EF-hand_6 EF-hand domain 0.00036 11 25.00 203 223
EF-hand_1 EF hand 0.00026 11 25.40 203 225
EF_assoc_2 EF hand associated 6.5E-33 103 21.50 234 319
EF-hand_7 EF-hand domain pair 0.025 6 30.00 324 350
EF-hand_1 EF hand 0.064 4 25.40 324 349
EF-hand_6 EF-hand domain 0.0056 8 25.00 327 350
EF_assoc_1 EF hand associated 9.9E-22 67 19.10 356 424
AAA_27 AAA domain 0.43 1 21.40 358 384
RsgA_GTPase RsgA GTPase 0.036 5 30.00 417 454
Arf ADP-ribosylation factor family 0.035 4 20.30 422 451
ATPase_2 ATPase domain predominantly from Archaea 3.1E-05 15 33.20 424 497
TniB Bacterial TniB protein 0.0013 9 20.10 428 471
AAA_29 P-loop containing region of AAA domain 0.0061 7 27.00 429 446
AAA_16 AAA ATPase domain 0.016 6 32.60 432 457
MMR_HSR1 GTPase of unknown function 3.9E-07 21 24.50 432 532
AAA_24 AAA domain 0.4 1 27.00 432 449
RNA_helicase RNA helicase 0.029 6 21.50 433 469
AAA_22 AAA domain 0.079 4 27.00 433 461
AAA_27 AAA domain 0.00069 10 21.40 433 463
Ras Ras family 3.1E-11 34 20.80 433 590
SRPRB Signal recognition particle receptor beta subunit 2.5E-05 14 20.50 433 550
ABC_tran ABC transporter 0.00036 12 23.10 434 464
Roc Ras of Complex, Roc, domain of DAPkinase 0.00016 13 27.00 434 547
Dynamin_N Dynamin family 6.2E-05 14 21.00 434 477
MCM MCM2/3/5 family 0.0035 7 25.20 434 519
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0001 13 27.00 434 465
AAA_23 AAA domain 0.0014 10 27.00 434 456
RsgA_GTPase RsgA GTPase 0.6 1 30.00 500 572
Arf ADP-ribosylation factor family 0.0038 7 20.30 501 553

648

TniB
Arf
AAA_29
AAA_24
MCM
ABC_tran
AAA_16
SRPRB
Ras
Roc
MMR_HSR1
Dynamin_N
ATPase_2
RsgA_GTPase
RNA_helicase
AAA_22
AAA_23
AAA_21
RsgA_GTPase
EF-hand_7
EF-hand_6
EF-hand_1
EF_assoc_2
EF-hand_7
EF-hand_1
EF-hand_6
EF_assoc_1
AAA_27
RsgA_GTPase
Arf
ATPase_2
TniB
AAA_29
AAA_16
MMR_HSR1
AAA_24
RNA_helicase
AAA_22
AAA_27
Ras
SRPRB
ABC_tran
Roc
Dynamin_N
MCM
AAA_21
AAA_23
RsgA_GTPase
Arf

References:

AAA_16

EF_assoc_2

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

EF-hand_6

RsgA_GTPase

EF_assoc_1
15218247 Cloning and characterization of the mouse Arht2 gene which encodes a putative atypical GTPase. Cytogenet Genome Res 2004;106:91-97.

EF-hand_7

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

EF-hand_1

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

ATPase_2

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

Roc

AAA_29

AAA_27

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_24

AAA_23

AAA_22

AAA_21

MCM
8332451 A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res 1993;21:2541-2547.

Domain	Description	Evalue	Bits	GA	Start	End
TniB	Bacterial TniB protein	0.0082	6	20.10	11	90
Arf	ADP-ribosylation factor family	0.0054	7	20.30	14	168
AAA_29	P-loop containing region of AAA domain	0.00064	10	27.00	16	38
AAA_24	AAA domain	0.0032	8	27.00	17	36
MCM	MCM2/3/5 family	0.018	5	25.20	18	37
ABC_tran	ABC transporter	0.0073	8	23.10	18	36
AAA_16	AAA ATPase domain	0.00048	11	32.60	18	38
SRPRB	Signal recognition particle receptor beta subunit	0.31	1	20.50	19	44
Ras	Ras family	1.3E-18	58	20.80	19	181
Roc	Ras of Complex, Roc, domain of DAPkinase	2E-08	25	27.00	19	131
MMR_HSR1	GTPase of unknown function	0.0014	10	24.50	19	98
Dynamin_N	Dynamin family	0.0061	7	21.00	20	36
ATPase_2	ATPase domain predominantly from Archaea	0.53	1	33.20	20	36
RsgA_GTPase	RsgA GTPase	0.018	6	30.00	20	35
RNA_helicase	RNA helicase	0.085	4	21.50	20	34
AAA_22	AAA domain	0.014	6	27.00	20	35
AAA_23	AAA domain	0.19	3	27.00	21	34
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.69	0	27.00	21	36
RsgA_GTPase	RsgA GTPase	0.21	2	30.00	84	169
EF-hand_7	EF-hand domain pair	0.00013	13	30.00	202	229
EF-hand_6	EF-hand domain	0.00036	11	25.00	203	223
EF-hand_1	EF hand	0.00026	11	25.40	203	225
EF_assoc_2	EF hand associated	6.5E-33	103	21.50	234	319
EF-hand_7	EF-hand domain pair	0.025	6	30.00	324	350
EF-hand_1	EF hand	0.064	4	25.40	324	349
EF-hand_6	EF-hand domain	0.0056	8	25.00	327	350
EF_assoc_1	EF hand associated	9.9E-22	67	19.10	356	424
AAA_27	AAA domain	0.43	1	21.40	358	384
RsgA_GTPase	RsgA GTPase	0.036	5	30.00	417	454
Arf	ADP-ribosylation factor family	0.035	4	20.30	422	451
ATPase_2	ATPase domain predominantly from Archaea	3.1E-05	15	33.20	424	497
TniB	Bacterial TniB protein	0.0013	9	20.10	428	471
AAA_29	P-loop containing region of AAA domain	0.0061	7	27.00	429	446
AAA_16	AAA ATPase domain	0.016	6	32.60	432	457
MMR_HSR1	GTPase of unknown function	3.9E-07	21	24.50	432	532
AAA_24	AAA domain	0.4	1	27.00	432	449
RNA_helicase	RNA helicase	0.029	6	21.50	433	469
AAA_22	AAA domain	0.079	4	27.00	433	461
AAA_27	AAA domain	0.00069	10	21.40	433	463
Ras	Ras family	3.1E-11	34	20.80	433	590
SRPRB	Signal recognition particle receptor beta subunit	2.5E-05	14	20.50	433	550
ABC_tran	ABC transporter	0.00036	12	23.10	434	464
Roc	Ras of Complex, Roc, domain of DAPkinase	0.00016	13	27.00	434	547
Dynamin_N	Dynamin family	6.2E-05	14	21.00	434	477
MCM	MCM2/3/5 family	0.0035	7	25.20	434	519
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0001	13	27.00	434	465
AAA_23	AAA domain	0.0014	10	27.00	434	456
RsgA_GTPase	RsgA GTPase	0.6	1	30.00	500	572
Arf	ADP-ribosylation factor family	0.0038	7	20.30	501	553