c2pfam

AT5G27660.1 :

Domain Description Evalue Bits GA Start End
SM-ATX Ataxin 2 SM domain 0.43 0 29.80 23 48
Trypsin Trypsin 1E-19 61 20.60 123 314
Peptidase_S32 Equine arteritis virus serine endopeptidase S32 0.0065 5 19.70 138 164
Peptidase_S46 Peptidase S46 0.099 1 20.70 143 165
Trypsin_2 Trypsin-like peptidase domain 1.5E-36 116 27.60 144 290
LSM LSM domain 0.00014 11 21.50 173 204
SM-ATX Ataxin 2 SM domain 9.8E-05 12 29.80 175 206
Arteri_nsp7a Arterivirus nonstructural protein 7 alpha 0.054 3 27.00 216 232
PDZ_6 PDZ domain 0.085 2 27.00 221 231
Peptidase_S32 Equine arteritis virus serine endopeptidase S32 0.001 8 19.70 247 291
Peptidase_S46 Peptidase S46 3.2E-05 12 20.70 267 292
PDZ_2 PDZ domain 4.2E-13 39 27.00 326 415
PDZ PDZ domain (Also known as DHR or GLGF) 1.9E-08 24 21.60 353 414
PDZ_6 PDZ domain 1.4E-13 40 27.00 359 404
Arteri_nsp7a Arterivirus nonstructural protein 7 alpha 0.0026 7 27.00 373 403

424

SM-ATX
Trypsin
Peptidase_S32
Peptidase_S46
Trypsin_2
LSM
SM-ATX
Arteri_nsp7a
PDZ_6
Peptidase_S32
Peptidase_S46
PDZ_2
PDZ
PDZ_6
Arteri_nsp7a

References:

PDZ_2

LSM
7744013 snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactions. EMBO J 1995;14:2076-2088.
10025403 Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. Cell 1999;96:375-387.
10428970 Characterization of Sm-like proteins in yeast and their association with U6 snRNA. EMBO J 1999;18:4321-4331.
10677490 Host factor Hfq of Escherichia coli stimulates elongation of poly(A) tails by poly(A) polymerase I. Proc Natl Acad Sci U S A 2000;97:1501-1505.
10809669 Hfq (HF1) stimulates ompA mRNA decay by interfering with ribosome binding. Genes Dev 2000;14:1109-1118.
12438310 Lsm Proteins are required for normal processing and stability of ribosomal RNAs. J Biol Chem 2003;278:2147-2156.

Trypsin
7845208 Families of Serine Peptidases Meth Enzymol 1994;244:19-61.
3112942 The Three Dimensional Structure of Asnl02 Trypsin: Role of Aspl02 in Serine Protease Catalysis Science 1987;237:905-909.

Trypsin_2

Peptidase_S46

PDZ
9204764 PDZ domains: targeting signalling molecules to sub-membranous sites. Bioessays 1997;19:469-479.
8674113 Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ. Cell. 1996;85:1067-1076.
9041651 Evidence for PDZ domains in bacteria, yeast, and plants. Protein Sci 1997;6:464-468.
19738200 Rapid evolution of functional complexity in a domain family. Sci Signal. 2009;2:ra50.

Arteri_nsp7a

Peptidase_S32
10725411 Virus-encoded proteinases and proteolytic processing in the Nidovirales. J Gen Virol 2000;81:853-879.

PDZ_6

SM-ATX

Domain	Description	Evalue	Bits	GA	Start	End
SM-ATX	Ataxin 2 SM domain	0.43	0	29.80	23	48
Trypsin	Trypsin	1E-19	61	20.60	123	314
Peptidase_S32	Equine arteritis virus serine endopeptidase S32	0.0065	5	19.70	138	164
Peptidase_S46	Peptidase S46	0.099	1	20.70	143	165
Trypsin_2	Trypsin-like peptidase domain	1.5E-36	116	27.60	144	290
LSM	LSM domain	0.00014	11	21.50	173	204
SM-ATX	Ataxin 2 SM domain	9.8E-05	12	29.80	175	206
Arteri_nsp7a	Arterivirus nonstructural protein 7 alpha	0.054	3	27.00	216	232
PDZ_6	PDZ domain	0.085	2	27.00	221	231
Peptidase_S32	Equine arteritis virus serine endopeptidase S32	0.001	8	19.70	247	291
Peptidase_S46	Peptidase S46	3.2E-05	12	20.70	267	292
PDZ_2	PDZ domain	4.2E-13	39	27.00	326	415
PDZ	PDZ domain (Also known as DHR or GLGF)	1.9E-08	24	21.60	353	414
PDZ_6	PDZ domain	1.4E-13	40	27.00	359	404
Arteri_nsp7a	Arterivirus nonstructural protein 7 alpha	0.0026	7	27.00	373	403