c2pfam

AT5G27950.1 :

Domain Description Evalue Bits GA Start End
Rit1_C Rit1 N-terminal domain 0.00021 11 27.00 26 76
DUF4618 Domain of unknown function (DUF4618) 0.00099 8 34.90 35 73
Ax_dynein_light Axonemal dynein light chain 0.0035 7 21.50 35 69
ABC_tran_CTD ABC transporter C-terminal domain 0.019 5 32.00 36 62
Spc24 Spc24 subunit of Ndc80 0.0022 8 22.00 37 68
DUF5798 Family of unknown function (DUF5798) 0.25 2 27.00 39 66
DUF4162 Domain of unknown function (DUF4162) 0.00034 11 27.40 39 88
ZapB Cell division protein ZapB 0.024 5 31.20 39 72
DUF1664 Protein of unknown function (DUF1664) 0.079 3 30.00 40 69
Cnn_1N Centrosomin N-terminal motif 1 1.1E-05 16 28.50 41 68
Microtub_bd Microtubule binding 0 137 27.00 63 214
T2SSE Type II/IV secretion system protein 3.1E-05 13 24.90 99 167
Kinesin Kinesin motor domain 0 323 22.50 111 404
DUF1664 Protein of unknown function (DUF1664) 0.006 7 30.00 397 448
ZapB Cell division protein ZapB 0.0073 7 31.20 399 446
Rit1_C Rit1 N-terminal domain 0.019 4 27.00 405 502
DUF4618 Domain of unknown function (DUF4618) 0.0041 6 34.90 410 449
Ax_dynein_light Axonemal dynein light chain 0.006 6 21.50 410 446
Cnn_1N Centrosomin N-terminal motif 1 0.49 1 28.50 412 454
DUF5798 Family of unknown function (DUF5798) 0.00045 10 27.00 414 452
Spc24 Spc24 subunit of Ndc80 0.0027 8 22.00 419 454
ABC_tran_CTD ABC transporter C-terminal domain 0.0069 7 32.00 419 449
DUF4618 Domain of unknown function (DUF4618) 0.099 2 34.90 510 557
Rit1_C Rit1 N-terminal domain 0.31 0 27.00 512 564

625

Rit1_C
DUF4618
Ax_dynein_light
ABC_tran_CTD
Spc24
DUF5798
DUF4162
ZapB
DUF1664
Cnn_1N
Microtub_bd
T2SSE
Kinesin
DUF1664
ZapB
Rit1_C
DUF4618
Ax_dynein_light
Cnn_1N
DUF5798
Spc24
ABC_tran_CTD
DUF4618
Rit1_C

References:

Spc24
11266451 The Ndc80p complex from Saccharomyces cerevisiae contains conserved centromere components and has a function in chromosome segregation. J Cell Biol 2001;152:349-360.

DUF5798

Ax_dynein_light
8662724 Purification, cloning, and sequence analysis of a Mr = 30,000 protein from sea urchin axonemes that is important for sperm motility. Relationship of the protein to a dynein light chain. J Biol Chem. 1996;271:12807-12813.
11606062 Association between actin and light chains in Chlamydomonas flagellar inner-arm dyneins. Biochem Biophys Res Commun. 2001;288:443-447.

DUF4162

DUF1664

T2SSE

Microtub_bd

DUF4618

Cnn_1N

ABC_tran_CTD

Kinesin
8606780 Crystal-structure of the motor domain af the kinesin-related motor NCD Nature 1996;380:550-555.
9428521 The crystal structure of dimeric kinesin and implications for microtubule-dependent motility. Cell 1997;91:985-994.

ZapB

Rit1_C

Domain	Description	Evalue	Bits	GA	Start	End
Rit1_C	Rit1 N-terminal domain	0.00021	11	27.00	26	76
DUF4618	Domain of unknown function (DUF4618)	0.00099	8	34.90	35	73
Ax_dynein_light	Axonemal dynein light chain	0.0035	7	21.50	35	69
ABC_tran_CTD	ABC transporter C-terminal domain	0.019	5	32.00	36	62
Spc24	Spc24 subunit of Ndc80	0.0022	8	22.00	37	68
DUF5798	Family of unknown function (DUF5798)	0.25	2	27.00	39	66
DUF4162	Domain of unknown function (DUF4162)	0.00034	11	27.40	39	88
ZapB	Cell division protein ZapB	0.024	5	31.20	39	72
DUF1664	Protein of unknown function (DUF1664)	0.079	3	30.00	40	69
Cnn_1N	Centrosomin N-terminal motif 1	1.1E-05	16	28.50	41	68
Microtub_bd	Microtubule binding	0	137	27.00	63	214
T2SSE	Type II/IV secretion system protein	3.1E-05	13	24.90	99	167
Kinesin	Kinesin motor domain	0	323	22.50	111	404
DUF1664	Protein of unknown function (DUF1664)	0.006	7	30.00	397	448
ZapB	Cell division protein ZapB	0.0073	7	31.20	399	446
Rit1_C	Rit1 N-terminal domain	0.019	4	27.00	405	502
DUF4618	Domain of unknown function (DUF4618)	0.0041	6	34.90	410	449
Ax_dynein_light	Axonemal dynein light chain	0.006	6	21.50	410	446
Cnn_1N	Centrosomin N-terminal motif 1	0.49	1	28.50	412	454
DUF5798	Family of unknown function (DUF5798)	0.00045	10	27.00	414	452
Spc24	Spc24 subunit of Ndc80	0.0027	8	22.00	419	454
ABC_tran_CTD	ABC transporter C-terminal domain	0.0069	7	32.00	419	449
DUF4618	Domain of unknown function (DUF4618)	0.099	2	34.90	510	557
Rit1_C	Rit1 N-terminal domain	0.31	0	27.00	512	564