c2pfam

AT5G28460.1 :

Domain Description Evalue Bits GA Start End
COX5A Cytochrome c oxidase subunit Va 0.0046 8 21.30 42 109
Mtf2 Mtf2 family 0.99 -1 27.00 82 105
PPR PPR repeat 0.17 3 25.00 157 178
TPR_19 Tetratricopeptide repeat 0.05 5 25.00 177 213
PPR_2 PPR repeat family 6.5E-08 23 30.00 187 230
PPR PPR repeat 2.1E-06 18 25.00 189 214
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.031 3 25.90 189 217
TPR_14 Tetratricopeptide repeat 0.021 6 23.50 193 214
PPR_3 Pentatricopeptide repeat domain 0.31 2 25.00 195 224
PPR_1 PPR repeat 3.2E-06 17 23.80 197 211
PPR_long Pentacotripeptide-repeat region of PRORP 0.42 0 27.00 202 259
ATP13 Mitochondrial ATPase expression 0.012 6 26.70 249 287
PPR_1 PPR repeat 0.00046 10 23.80 254 283
PPR_2 PPR repeat family 0.0014 9 30.00 257 289
PPR PPR repeat 0.28 2 25.00 265 287
PPR_long Pentacotripeptide-repeat region of PRORP 3.1E-06 17 27.00 271 357
PPR PPR repeat 0.008 7 25.00 297 322
PPR_3 Pentatricopeptide repeat domain 6.5E-05 14 25.00 297 339
PPR_2 PPR repeat family 4E-08 24 30.00 297 341
ATP13 Mitochondrial ATPase expression 0.27 2 26.70 298 326
Mtf2 Mtf2 family 0.19 2 27.00 308 336
PPR_3 Pentatricopeptide repeat domain 7.8E-05 13 25.00 317 359
PPR_1 PPR repeat 6.5E-14 42 23.80 325 356
PPR_2 PPR repeat family 9.1E-09 26 30.00 327 358
PPR PPR repeat 2E-08 25 25.00 330 358
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.012 5 25.90 330 436
TPR_19 Tetratricopeptide repeat 0.13 3 25.00 335 362
TPR_7 Tetratricopeptide repeat 0.03 5 27.90 337 354
TPR_1 Tetratricopeptide repeat 0.95 0 20.40 337 354
TPR_10 Tetratricopeptide repeat 0.56 1 27.50 337 354
TPR_2 Tetratricopeptide repeat 0.14 3 22.40 338 354
Phage_ABA_S Phage ABA sandwich domain 0.13 4 27.00 338 358
TPR_19 Tetratricopeptide repeat 0.0087 7 25.00 343 399
V-SNARE Vesicle transport v-SNARE protein N-terminus 0.81 1 21.80 343 355
PPR_3 Pentatricopeptide repeat domain 2.5E-10 31 25.00 366 414
PPR_1 PPR repeat 6.1E-14 42 23.80 367 397
PPR_2 PPR repeat family 9.1E-11 32 30.00 369 409
Clathrin Region in Clathrin and VPS 0.71 0 23.60 369 429
PPR PPR repeat 7.8E-10 29 25.00 372 397
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.59 0 28.10 376 395
TPR_10 Tetratricopeptide repeat 0.27 2 27.50 380 393
PPR_long Pentacotripeptide-repeat region of PRORP 6E-05 13 27.00 384 440
V-SNARE Vesicle transport v-SNARE protein N-terminus 0.017 6 21.80 385 404
PPR_1 PPR repeat 4.8E-17 52 23.80 402 433
PPR_2 PPR repeat family 1.6E-18 57 30.00 404 453
PPR_3 Pentatricopeptide repeat domain 6.8E-14 42 25.00 405 449
PPR PPR repeat 4.5E-12 36 25.00 407 436
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.033 4 28.10 412 434
Phage_ABA_S Phage ABA sandwich domain 0.12 4 27.00 419 442
PPR_1 PPR repeat 8.7E-08 22 23.80 436 468
PPR_2 PPR repeat family 5.1E-17 52 30.00 439 488
PPR PPR repeat 9.6E-05 13 25.00 442 472
PPR_long Pentacotripeptide-repeat region of PRORP 7.9E-12 35 27.00 456 587
PPR_3 Pentatricopeptide repeat domain 1.5E-12 38 25.00 464 519
Mtf2 Mtf2 family 0.48 0 27.00 464 479
PPR_1 PPR repeat 3.1E-08 24 23.80 471 502
PPR_2 PPR repeat family 2.7E-14 44 30.00 475 523
PPR PPR repeat 4E-09 27 25.00 477 507
TPR_1 Tetratricopeptide repeat 0.31 2 20.40 479 504
COX5A Cytochrome c oxidase subunit Va 0.25 2 21.30 482 536
TPR_7 Tetratricopeptide repeat 0.33 2 27.90 485 507
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.065 2 25.90 490 568
ATP13 Mitochondrial ATPase expression 0.23 2 26.70 505 537
PPR_1 PPR repeat 2.8E-07 21 23.80 506 536
PPR_2 PPR repeat family 0.00032 11 30.00 509 545
PPR PPR repeat 0.00029 12 25.00 514 542
PPR_3 Pentatricopeptide repeat domain 4.8E-07 20 25.00 514 558
Phage_ABA_S Phage ABA sandwich domain 0.052 5 27.00 528 558
PPR_long Pentacotripeptide-repeat region of PRORP 3.7E-14 43 27.00 529 641
PPR_3 Pentatricopeptide repeat domain 5E-12 36 25.00 532 593
PPR_1 PPR repeat 8E-05 13 23.80 541 573
Clathrin Region in Clathrin and VPS 0.0075 7 23.60 546 605
PPR_2 PPR repeat family 6.4E-13 39 30.00 547 588
PPR PPR repeat 2.2E-05 15 25.00 548 576
Mtf2 Mtf2 family 0.37 1 27.00 560 586
PPR_3 Pentatricopeptide repeat domain 8.3E-14 42 25.00 568 626
PPR_1 PPR repeat 2.3E-07 21 23.80 576 608
PPR_2 PPR repeat family 3.6E-15 46 30.00 579 628
PPR PPR repeat 1E-08 26 25.00 582 612
Mtf2 Mtf2 family 0.12 2 27.00 584 614
COX5A Cytochrome c oxidase subunit Va 0.064 4 21.30 588 665
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.0042 8 26.10 593 662
ATP13 Mitochondrial ATPase expression 0.0034 8 26.70 600 641
PPR_3 Pentatricopeptide repeat domain 3.2E-11 34 25.00 603 663
PPR_1 PPR repeat 6.9E-13 39 23.80 610 642
PPR_2 PPR repeat family 7E-09 26 30.00 614 642
PPR PPR repeat 8.1E-10 29 25.00 618 642
Clathrin Region in Clathrin and VPS 0.39 1 23.60 620 667
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.051 3 25.90 621 681
TPR_14 Tetratricopeptide repeat 0.51 2 23.50 624 641
TPR_7 Tetratricopeptide repeat 0.015 6 27.90 624 640
TPR_1 Tetratricopeptide repeat 0.081 3 20.40 625 640
TPR_10 Tetratricopeptide repeat 0.04 4 27.50 625 641
TPR_2 Tetratricopeptide repeat 0.16 3 22.40 625 640
TPR_19 Tetratricopeptide repeat 0.013 7 25.00 630 671
PPR_long Pentacotripeptide-repeat region of PRORP 3.7E-09 27 27.00 633 731
PPR_1 PPR repeat 2.8E-09 27 23.80 648 679
PPR_2 PPR repeat family 9E-16 48 30.00 650 697
COX5A Cytochrome c oxidase subunit Va 0.57 1 21.30 650 699
PPR PPR repeat 2.3E-08 25 25.00 653 681
TPR_1 Tetratricopeptide repeat 0.038 5 20.40 654 672
TPR_7 Tetratricopeptide repeat 0.77 1 27.90 660 674
Mtf2 Mtf2 family 0.0058 7 27.00 665 728
PPR_3 Pentatricopeptide repeat domain 3E-09 27 25.00 673 730
PPR_1 PPR repeat 0.016 6 23.80 682 693
PPR PPR repeat 0.0064 7 25.00 689 718
PPR_2 PPR repeat family 2.9E-06 18 30.00 703 730
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.51 1 26.10 704 723

766

COX5A
Mtf2
PPR
TPR_19
PPR_2
PPR
MRP-S27
TPR_14
PPR_3
PPR_1
PPR_long
ATP13
PPR_1
PPR_2
PPR
PPR_long
PPR
PPR_3
PPR_2
ATP13
Mtf2
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
TPR_19
TPR_7
TPR_1
TPR_10
TPR_2
Phage_ABA_S
TPR_19
V-SNARE
PPR_3
PPR_1
PPR_2
Clathrin
PPR
SPOB_a
TPR_10
PPR_long
V-SNARE
PPR_1
PPR_2
PPR_3
PPR
SPOB_a
Phage_ABA_S
PPR_1
PPR_2
PPR
PPR_long
PPR_3
Mtf2
PPR_1
PPR_2
PPR
TPR_1
COX5A
TPR_7
MRP-S27
ATP13
PPR_1
PPR_2
PPR
PPR_3
Phage_ABA_S
PPR_long
PPR_3
PPR_1
Clathrin
PPR_2
PPR
Mtf2
PPR_3
PPR_1
PPR_2
PPR
Mtf2
COX5A
RPM2
ATP13
PPR_3
PPR_1
PPR_2
PPR
Clathrin
MRP-S27
TPR_14
TPR_7
TPR_1
TPR_10
TPR_2
TPR_19
PPR_long
PPR_1
PPR_2
COX5A
PPR
TPR_1
TPR_7
Mtf2
PPR_3
PPR_1
PPR
PPR_2
RPM2

References:

TPR_7

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

V-SNARE
10359592 The Saccharomyces cerevisiae v-SNARE Vti1p is required for multiple membrane transport pathways to the vacuole. Mol Biol Cell 1999;10:1719-1732.

ATP13

Phage_ABA_S

Mtf2

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

COX5A
8638158 The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A. Science 1996;272:1136-1144.

Domain	Description	Evalue	Bits	GA	Start	End
COX5A	Cytochrome c oxidase subunit Va	0.0046	8	21.30	42	109
Mtf2	Mtf2 family	0.99	-1	27.00	82	105
PPR	PPR repeat	0.17	3	25.00	157	178
TPR_19	Tetratricopeptide repeat	0.05	5	25.00	177	213
PPR_2	PPR repeat family	6.5E-08	23	30.00	187	230
PPR	PPR repeat	2.1E-06	18	25.00	189	214
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.031	3	25.90	189	217
TPR_14	Tetratricopeptide repeat	0.021	6	23.50	193	214
PPR_3	Pentatricopeptide repeat domain	0.31	2	25.00	195	224
PPR_1	PPR repeat	3.2E-06	17	23.80	197	211
PPR_long	Pentacotripeptide-repeat region of PRORP	0.42	0	27.00	202	259
ATP13	Mitochondrial ATPase expression	0.012	6	26.70	249	287
PPR_1	PPR repeat	0.00046	10	23.80	254	283
PPR_2	PPR repeat family	0.0014	9	30.00	257	289
PPR	PPR repeat	0.28	2	25.00	265	287
PPR_long	Pentacotripeptide-repeat region of PRORP	3.1E-06	17	27.00	271	357
PPR	PPR repeat	0.008	7	25.00	297	322
PPR_3	Pentatricopeptide repeat domain	6.5E-05	14	25.00	297	339
PPR_2	PPR repeat family	4E-08	24	30.00	297	341
ATP13	Mitochondrial ATPase expression	0.27	2	26.70	298	326
Mtf2	Mtf2 family	0.19	2	27.00	308	336
PPR_3	Pentatricopeptide repeat domain	7.8E-05	13	25.00	317	359
PPR_1	PPR repeat	6.5E-14	42	23.80	325	356
PPR_2	PPR repeat family	9.1E-09	26	30.00	327	358
PPR	PPR repeat	2E-08	25	25.00	330	358
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.012	5	25.90	330	436
TPR_19	Tetratricopeptide repeat	0.13	3	25.00	335	362
TPR_7	Tetratricopeptide repeat	0.03	5	27.90	337	354
TPR_1	Tetratricopeptide repeat	0.95	0	20.40	337	354
TPR_10	Tetratricopeptide repeat	0.56	1	27.50	337	354
TPR_2	Tetratricopeptide repeat	0.14	3	22.40	338	354
Phage_ABA_S	Phage ABA sandwich domain	0.13	4	27.00	338	358
TPR_19	Tetratricopeptide repeat	0.0087	7	25.00	343	399
V-SNARE	Vesicle transport v-SNARE protein N-terminus	0.81	1	21.80	343	355
PPR_3	Pentatricopeptide repeat domain	2.5E-10	31	25.00	366	414
PPR_1	PPR repeat	6.1E-14	42	23.80	367	397
PPR_2	PPR repeat family	9.1E-11	32	30.00	369	409
Clathrin	Region in Clathrin and VPS	0.71	0	23.60	369	429
PPR	PPR repeat	7.8E-10	29	25.00	372	397
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.59	0	28.10	376	395
TPR_10	Tetratricopeptide repeat	0.27	2	27.50	380	393
PPR_long	Pentacotripeptide-repeat region of PRORP	6E-05	13	27.00	384	440
V-SNARE	Vesicle transport v-SNARE protein N-terminus	0.017	6	21.80	385	404
PPR_1	PPR repeat	4.8E-17	52	23.80	402	433
PPR_2	PPR repeat family	1.6E-18	57	30.00	404	453
PPR_3	Pentatricopeptide repeat domain	6.8E-14	42	25.00	405	449
PPR	PPR repeat	4.5E-12	36	25.00	407	436
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.033	4	28.10	412	434
Phage_ABA_S	Phage ABA sandwich domain	0.12	4	27.00	419	442
PPR_1	PPR repeat	8.7E-08	22	23.80	436	468
PPR_2	PPR repeat family	5.1E-17	52	30.00	439	488
PPR	PPR repeat	9.6E-05	13	25.00	442	472
PPR_long	Pentacotripeptide-repeat region of PRORP	7.9E-12	35	27.00	456	587
PPR_3	Pentatricopeptide repeat domain	1.5E-12	38	25.00	464	519
Mtf2	Mtf2 family	0.48	0	27.00	464	479
PPR_1	PPR repeat	3.1E-08	24	23.80	471	502
PPR_2	PPR repeat family	2.7E-14	44	30.00	475	523
PPR	PPR repeat	4E-09	27	25.00	477	507
TPR_1	Tetratricopeptide repeat	0.31	2	20.40	479	504
COX5A	Cytochrome c oxidase subunit Va	0.25	2	21.30	482	536
TPR_7	Tetratricopeptide repeat	0.33	2	27.90	485	507
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.065	2	25.90	490	568
ATP13	Mitochondrial ATPase expression	0.23	2	26.70	505	537
PPR_1	PPR repeat	2.8E-07	21	23.80	506	536
PPR_2	PPR repeat family	0.00032	11	30.00	509	545
PPR	PPR repeat	0.00029	12	25.00	514	542
PPR_3	Pentatricopeptide repeat domain	4.8E-07	20	25.00	514	558
Phage_ABA_S	Phage ABA sandwich domain	0.052	5	27.00	528	558
PPR_long	Pentacotripeptide-repeat region of PRORP	3.7E-14	43	27.00	529	641
PPR_3	Pentatricopeptide repeat domain	5E-12	36	25.00	532	593
PPR_1	PPR repeat	8E-05	13	23.80	541	573
Clathrin	Region in Clathrin and VPS	0.0075	7	23.60	546	605
PPR_2	PPR repeat family	6.4E-13	39	30.00	547	588
PPR	PPR repeat	2.2E-05	15	25.00	548	576
Mtf2	Mtf2 family	0.37	1	27.00	560	586
PPR_3	Pentatricopeptide repeat domain	8.3E-14	42	25.00	568	626
PPR_1	PPR repeat	2.3E-07	21	23.80	576	608
PPR_2	PPR repeat family	3.6E-15	46	30.00	579	628
PPR	PPR repeat	1E-08	26	25.00	582	612
Mtf2	Mtf2 family	0.12	2	27.00	584	614
COX5A	Cytochrome c oxidase subunit Va	0.064	4	21.30	588	665
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.0042	8	26.10	593	662
ATP13	Mitochondrial ATPase expression	0.0034	8	26.70	600	641
PPR_3	Pentatricopeptide repeat domain	3.2E-11	34	25.00	603	663
PPR_1	PPR repeat	6.9E-13	39	23.80	610	642
PPR_2	PPR repeat family	7E-09	26	30.00	614	642
PPR	PPR repeat	8.1E-10	29	25.00	618	642
Clathrin	Region in Clathrin and VPS	0.39	1	23.60	620	667
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.051	3	25.90	621	681
TPR_14	Tetratricopeptide repeat	0.51	2	23.50	624	641
TPR_7	Tetratricopeptide repeat	0.015	6	27.90	624	640
TPR_1	Tetratricopeptide repeat	0.081	3	20.40	625	640
TPR_10	Tetratricopeptide repeat	0.04	4	27.50	625	641
TPR_2	Tetratricopeptide repeat	0.16	3	22.40	625	640
TPR_19	Tetratricopeptide repeat	0.013	7	25.00	630	671
PPR_long	Pentacotripeptide-repeat region of PRORP	3.7E-09	27	27.00	633	731
PPR_1	PPR repeat	2.8E-09	27	23.80	648	679
PPR_2	PPR repeat family	9E-16	48	30.00	650	697
COX5A	Cytochrome c oxidase subunit Va	0.57	1	21.30	650	699
PPR	PPR repeat	2.3E-08	25	25.00	653	681
TPR_1	Tetratricopeptide repeat	0.038	5	20.40	654	672
TPR_7	Tetratricopeptide repeat	0.77	1	27.90	660	674
Mtf2	Mtf2 family	0.0058	7	27.00	665	728
PPR_3	Pentatricopeptide repeat domain	3E-09	27	25.00	673	730
PPR_1	PPR repeat	0.016	6	23.80	682	693
PPR	PPR repeat	0.0064	7	25.00	689	718
PPR_2	PPR repeat family	2.9E-06	18	30.00	703	730
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.51	1	26.10	704	723