c2pfam

AT5G28770.1 :

Domain Description Evalue Bits GA Start End
CCDC106 Coiled-coil domain-containing protein 106 3.3E-05 14 30.20 68 166
Chorion_3 Chorion family 3 0.00021 12 20.60 80 162
Macoilin Transmembrane protein 6.5E-05 12 32.00 94 223
DUF812 Protein of unknown function (DUF812) 7E-07 19 30.00 107 228
BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 0.012 7 25.00 125 182
bZIP_Maf bZIP Maf transcription factor 3E-05 15 20.70 135 196
DUF4200 Domain of unknown function (DUF4200) 0.00012 13 29.70 144 193
bZIP_1 bZIP transcription factor 2.6E-16 50 22.00 145 192
DUF4164 Domain of unknown function (DUF4164) 0.00043 11 27.20 145 219
bZIP_2 Basic region leucine zipper 5.4E-10 30 21.30 146 189
BRE1 BRE1 E3 ubiquitin ligase 0.0022 9 23.40 149 226
CENP-H Centromere protein H (CENP-H) 0.0025 9 23.00 151 226
ATG16 Autophagy protein 16 (ATG16) 0.00021 12 35.00 153 228
HAUS-augmin3 HAUS augmin-like complex subunit 3 3.1E-05 14 27.80 156 232
ADIP Afadin- and alpha -actinin-Binding 7.2E-05 14 29.10 161 228
DivIC Septum formation initiator 0.039 4 24.00 162 193
ZapB Cell division protein ZapB 0.059 5 31.20 164 187
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.081 4 35.00 167 195
ZapB Cell division protein ZapB 0.011 7 31.20 168 228
FlaC_arch Flagella accessory protein C (FlaC) 0.0022 9 22.00 168 199
TSC22 TSC-22/dip/bun family 0.006 7 25.00 168 187
YabA Initiation control protein YabA 0.00021 13 30.00 171 223
BLOC1_2 Biogenesis of lysosome-related organelles complex-1 subunit 2 0.025 6 25.00 184 228
TSC22 TSC-22/dip/bun family 0.058 4 25.00 190 211
FlaC_arch Flagella accessory protein C (FlaC) 0.0013 10 22.00 194 228
DivIC Septum formation initiator 0.013 6 24.00 202 228
bZIP_1 bZIP transcription factor 0.45 1 22.00 203 219
bZIP_2 Basic region leucine zipper 0.13 3 21.30 205 221
DUF4200 Domain of unknown function (DUF4200) 0.26 2 29.70 205 231
TMF_DNA_bd TATA element modulatory factor 1 DNA binding 0.0079 7 35.00 206 228
bZIP_C Basic leucine-zipper C terminal 5.4E-15 47 22.70 213 259
bZIP_C Basic leucine-zipper C terminal 2.2E-08 26 22.70 278 302
ZapB Cell division protein ZapB 0.3 2 31.20 291 303

307

CCDC106
Chorion_3
Macoilin
DUF812
BLOC1_2
bZIP_Maf
DUF4200
bZIP_1
DUF4164
bZIP_2
BRE1
CENP-H
ATG16
HAUS-augmin3
ADIP
DivIC
ZapB
TMF_DNA_bd
ZapB
FlaC_arch
TSC22
YabA
BLOC1_2
TSC22
FlaC_arch
DivIC
bZIP_1
bZIP_2
DUF4200
TMF_DNA_bd
bZIP_C
bZIP_C
ZapB

References:

bZIP_1

DUF812

ADIP
12446711 ADIP, a novel Afadin- and alpha-actinin-binding protein localized at cell-cell adherens junctions. J Biol Chem. 2003;278:4103-4111.
17486116 Gamma-tubulin complex-mediated anchoring of spindle microtubules to spindle-pole bodies requires Msd1 in fission yeast. Nat Cell Biol. 2007;9:646-653.

DivIC
8113187 Characterization of a cell division gene from Bacillus subtilis that is required for vegetative and sporulation septum formation. J Bacteriol 1994;176:1451-1459.

CCDC106

HAUS-augmin3

BRE1
16337599 The human homolog of yeast BRE1 functions as a transcriptional coactivator through direct activator interactions. Mol Cell. 2005;20:759-770.

Macoilin
17341690 An improved method for the analysis of membrane proteins by mass spectrometry. Physiol Genomics. 2007; [Epub ahead of print]

DUF4164

DUF4200

FlaC_arch
11250034 The archaeal flagellum: a different kind of prokaryotic motility structure. FEMS Microbiol Rev 2001;25:147-174.
11717274 Characterization of flagellum gene families of methanogenic archaea and localization of novel flagellum accessory proteins. J Bacteriol 2001;183:7154-7164.

Chorion_3
1908228 Drosophila chorion genes: cracking the eggshell's secrets. Bioessays 1991;13:97-105.

TMF_DNA_bd
9742951 Tyrosine phosphorylation of the TATA element modulatory factor by the FER nuclear tyrosine kinases. FEBS Lett. 1998;434:339-345.
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

ATG16
10406794 Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J. 1999;18:3888-3896.
17012802 Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy. Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006;62:1021-1023.

ZapB

TSC22
9388238 Solution structure of porcine delta sleep-inducing peptide immunoreactive peptide A homolog of the shortsighted gene product. J Biol Chem 1997;272:30918-30927.

YabA

BLOC1_2
15102850 Identification of snapin and three novel proteins (BLOS1, BLOS2, and BLOS3/reduced pigmentation) as subunits of biogenesis of lysosome-related organelles complex-1 (BLOC-1). J Biol Chem. 2004;279:28393-28401.

CENP-H
10488063 Characterization of a novel kinetochore protein, CENP-H. J Biol Chem 1999;274:27343-27346.
11500386 CENP-H, a constitutive centromere component, is required for centromere targeting of CENP-C in vertebrate cells. EMBO J 2001;20:4603-4617.

bZIP_Maf
11416124 Phosphorylation of mafa is essential for its transcriptional and biological properties. Mol Cell Biol 2001;21:4441-4452.

bZIP_C
9049271 Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter. Plant Mol Biol. 1997;33:513-522.

bZIP_2
11906833 bZIP transcription factors in Arabidopsis. Trends Plant Sci 2002;7:106-111.
12867624 bZIP proteins of human gammaherpesviruses. J Gen Virol 2003;84:1941-1949.
7780801 Transcription factors 1: bZIP proteins. Protein Profile 1995;2:101-168.

Domain	Description	Evalue	Bits	GA	Start	End
CCDC106	Coiled-coil domain-containing protein 106	3.3E-05	14	30.20	68	166
Chorion_3	Chorion family 3	0.00021	12	20.60	80	162
Macoilin	Transmembrane protein	6.5E-05	12	32.00	94	223
DUF812	Protein of unknown function (DUF812)	7E-07	19	30.00	107	228
BLOC1_2	Biogenesis of lysosome-related organelles complex-1 subunit 2	0.012	7	25.00	125	182
bZIP_Maf	bZIP Maf transcription factor	3E-05	15	20.70	135	196
DUF4200	Domain of unknown function (DUF4200)	0.00012	13	29.70	144	193
bZIP_1	bZIP transcription factor	2.6E-16	50	22.00	145	192
DUF4164	Domain of unknown function (DUF4164)	0.00043	11	27.20	145	219
bZIP_2	Basic region leucine zipper	5.4E-10	30	21.30	146	189
BRE1	BRE1 E3 ubiquitin ligase	0.0022	9	23.40	149	226
CENP-H	Centromere protein H (CENP-H)	0.0025	9	23.00	151	226
ATG16	Autophagy protein 16 (ATG16)	0.00021	12	35.00	153	228
HAUS-augmin3	HAUS augmin-like complex subunit 3	3.1E-05	14	27.80	156	232
ADIP	Afadin- and alpha -actinin-Binding	7.2E-05	14	29.10	161	228
DivIC	Septum formation initiator	0.039	4	24.00	162	193
ZapB	Cell division protein ZapB	0.059	5	31.20	164	187
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.081	4	35.00	167	195
ZapB	Cell division protein ZapB	0.011	7	31.20	168	228
FlaC_arch	Flagella accessory protein C (FlaC)	0.0022	9	22.00	168	199
TSC22	TSC-22/dip/bun family	0.006	7	25.00	168	187
YabA	Initiation control protein YabA	0.00021	13	30.00	171	223
BLOC1_2	Biogenesis of lysosome-related organelles complex-1 subunit 2	0.025	6	25.00	184	228
TSC22	TSC-22/dip/bun family	0.058	4	25.00	190	211
FlaC_arch	Flagella accessory protein C (FlaC)	0.0013	10	22.00	194	228
DivIC	Septum formation initiator	0.013	6	24.00	202	228
bZIP_1	bZIP transcription factor	0.45	1	22.00	203	219
bZIP_2	Basic region leucine zipper	0.13	3	21.30	205	221
DUF4200	Domain of unknown function (DUF4200)	0.26	2	29.70	205	231
TMF_DNA_bd	TATA element modulatory factor 1 DNA binding	0.0079	7	35.00	206	228
bZIP_C	Basic leucine-zipper C terminal	5.4E-15	47	22.70	213	259
bZIP_C	Basic leucine-zipper C terminal	2.2E-08	26	22.70	278	302
ZapB	Cell division protein ZapB	0.3	2	31.20	291	303