c2pfam

AT5G32440.1 :

Domain Description Evalue Bits GA Start End
CUE CUE domain 3.1E-07 20 20.40 49 84
DMA DMRTA motif 6.2E-05 12 20.30 49 79
Retrotrans_gag Retrotransposon gag protein 0.17 2 20.90 53 89
GAS Growth-arrest specific micro-tubule binding 0.26 0 32.30 61 97
DUF4164 Domain of unknown function (DUF4164) 0.16 2 27.20 63 83
Syntaxin-6_N Syntaxin 6, N-terminal 0.3 2 24.90 66 86
DUF4164 Domain of unknown function (DUF4164) 0.00029 11 27.20 143 220
CCDC144C CCDC144C protein coiled-coil region 0.00066 9 30.70 146 209
ZapB Cell division protein ZapB 0.0003 11 31.20 157 227
Syntaxin-6_N Syntaxin 6, N-terminal 0.0014 9 24.90 161 235
GAS Growth-arrest specific micro-tubule binding 0.0032 7 32.30 163 251
Occludin_ELL Occludin homology domain 8.3E-05 13 25.30 171 229
Retrotrans_gag Retrotransposon gag protein 0.84 0 20.90 172 184
DUF5595 Domain of unknown function (DUF5595) 0.041 4 29.00 172 192
Csm1_N Csm1 N-terminal domain 0.00023 11 26.30 173 217
ArsC ArsC family 1.4E-05 15 21.00 174 207
Retrotrans_gag Retrotransposon gag protein 0.31 1 20.90 197 236
Csm1_N Csm1 N-terminal domain 0.049 4 26.30 209 237
ZapB Cell division protein ZapB 0.046 4 31.20 216 249
DUF5595 Domain of unknown function (DUF5595) 0.0081 6 29.00 216 251
CCDC144C CCDC144C protein coiled-coil region 0.0015 7 30.70 219 252

264

CUE
DMA
Retrotrans_gag
GAS
DUF4164
Syntaxin-6_N
DUF4164
CCDC144C
ZapB
Syntaxin-6_N
GAS
Occludin_ELL
Retrotrans_gag
DUF5595
Csm1_N
ArsC
Retrotrans_gag
Csm1_N
ZapB
DUF5595
CCDC144C

References:

CCDC144C

Syntaxin-6_N
12082176 Three-dimensional structure of the amino-terminal domain of syntaxin 6, a SNAP-25 C homolog. Proc Natl Acad Sci U S A. 2002;99:9184-9189.

DUF4164

GAS

Occludin_ELL
8276896 Occludin: a novel integral membrane protein localizing at tight junctions. J Cell Biol 1993;123:1777-1788.
8596958 An RNA polymerase II elongation factor encoded by the human ELL gene. Science 1996;271:1873-1876.
16081103 Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface. J Mol Biol. 2005;352:151-164.

CUE
9388185 Role of Cue1p in ubiquitination and degradation at the ER surface. Science 1997;278:1806-1809.
11023840 Proteins of the endoplasmic-reticulum-associated degradation pathway: domain detection and function prediction. Biochem J 2000;351:527-535.
12573224 Ubiquitin Signals Protein Trafficking via Interaction with a Novel Ubiquitin Binding Domain in the Membrane Fusion Regulator, Vps9p. Curr Biol 2003;13:258-262.
12628920 A ubiquitin-binding motif required for intramolecular monoubiquitylation, the CUE domain. EMBO J 2003;22:1273-1281.
12787503 Solution structure of a CUE-ubiquitin complex reveals a conserved mode of ubiquitin binding. Cell 2003;113:621-630.

ZapB

DUF5595

Retrotrans_gag
11600699 Pyret, a Ty3/Gypsy retrotransposon in Magnaporthe grisea contains an extra domain between the nucleocapsid and protease domains. Nucleic Acids Res 2001;29:4106-4113.

DMA
10729224 The human doublesex-related gene, DMRT2, is homologous to a gene involved in somitogenesis and encodes a potential bicistronic transcript. Genomics 2000;64:179-186.
10729223 The region on 9p associated with 46,XY sex reversal contains several transcripts expressed in the urogenital system and a novel doublesex-related domain. Genomics 2000;64:170-178.

Csm1_N

ArsC

Domain	Description	Evalue	Bits	GA	Start	End
CUE	CUE domain	3.1E-07	20	20.40	49	84
DMA	DMRTA motif	6.2E-05	12	20.30	49	79
Retrotrans_gag	Retrotransposon gag protein	0.17	2	20.90	53	89
GAS	Growth-arrest specific micro-tubule binding	0.26	0	32.30	61	97
DUF4164	Domain of unknown function (DUF4164)	0.16	2	27.20	63	83
Syntaxin-6_N	Syntaxin 6, N-terminal	0.3	2	24.90	66	86
DUF4164	Domain of unknown function (DUF4164)	0.00029	11	27.20	143	220
CCDC144C	CCDC144C protein coiled-coil region	0.00066	9	30.70	146	209
ZapB	Cell division protein ZapB	0.0003	11	31.20	157	227
Syntaxin-6_N	Syntaxin 6, N-terminal	0.0014	9	24.90	161	235
GAS	Growth-arrest specific micro-tubule binding	0.0032	7	32.30	163	251
Occludin_ELL	Occludin homology domain	8.3E-05	13	25.30	171	229
Retrotrans_gag	Retrotransposon gag protein	0.84	0	20.90	172	184
DUF5595	Domain of unknown function (DUF5595)	0.041	4	29.00	172	192
Csm1_N	Csm1 N-terminal domain	0.00023	11	26.30	173	217
ArsC	ArsC family	1.4E-05	15	21.00	174	207
Retrotrans_gag	Retrotransposon gag protein	0.31	1	20.90	197	236
Csm1_N	Csm1 N-terminal domain	0.049	4	26.30	209	237
ZapB	Cell division protein ZapB	0.046	4	31.20	216	249
DUF5595	Domain of unknown function (DUF5595)	0.0081	6	29.00	216	251
CCDC144C	CCDC144C protein coiled-coil region	0.0015	7	30.70	219	252