c2pfam

AT5G35840.1 :

Domain Description Evalue Bits GA Start End
PAS_2 PAS fold 0 134 21.40 65 180
PAS_8 PAS domain 0.68 0 21.80 81 109
PAS_9 PAS domain 0.51 0 27.00 82 105
PAS PAS fold 0.44 0 22.60 82 111
PAS_10 PAS domain 0.98 0 22.10 83 108
GAF GAF domain 9.8E-38 119 20.90 214 392
PHY Phytochrome region 0 182 20.30 406 580
PAS PAS fold 1.9E-28 88 22.60 607 721
PAS_10 PAS domain 0.00028 11 22.10 610 721
PAS_8 PAS domain 1.4E-05 15 21.80 611 657
PAS_4 PAS fold 5E-11 32 23.10 615 725
PAS_9 PAS domain 1.2E-06 18 27.00 618 722
PAS_2 PAS fold 0.033 4 21.40 628 668
PAS_3 PAS fold 0.00045 10 20.70 631 684
PAS PAS fold 3E-29 91 22.60 737 860
PAS_4 PAS fold 3E-05 14 23.10 751 860
PAS_8 PAS domain 0.0017 8 21.80 751 797
PAS_9 PAS domain 1.5E-06 18 27.00 751 859
PAS_3 PAS fold 0.022 5 20.70 764 857
GAF GAF domain 0.57 0 20.90 849 872
HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1.7E-11 34 21.30 994 1093

1111

PAS_2
PAS_8
PAS_9
PAS
PAS_10
GAF
PHY
PAS
PAS_10
PAS_8
PAS_4
PAS_9
PAS_2
PAS_3
PAS
PAS_4
PAS_8
PAS_9
PAS_3
GAF
HATPase_c

References:

PAS_4
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

PAS_9

PAS_8

PAS_2
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

GAF
9433123 The GAF domain: an evolutionary link between diverse phototransducing proteins. Trends Biochem Sci 1997;22:458-459.

PAS
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

PAS_10

PHY

PAS_3
9301332 PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem Sci 1997;22:331-333.
7756254 1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore. Biochemistry 1995;34:6278-6287.
9382818 PAS: a multifunctional domain family comes to light. Curr Biol 1997;7:674-677.
15009198 The PAS fold: a redefination of the PAS domain based upon structural prediction. Eur J Biochem 2004;271:1198-1208.

HATPase_c

Domain	Description	Evalue	Bits	GA	Start	End
PAS_2	PAS fold	0	134	21.40	65	180
PAS_8	PAS domain	0.68	0	21.80	81	109
PAS_9	PAS domain	0.51	0	27.00	82	105
PAS	PAS fold	0.44	0	22.60	82	111
PAS_10	PAS domain	0.98	0	22.10	83	108
GAF	GAF domain	9.8E-38	119	20.90	214	392
PHY	Phytochrome region	0	182	20.30	406	580
PAS	PAS fold	1.9E-28	88	22.60	607	721
PAS_10	PAS domain	0.00028	11	22.10	610	721
PAS_8	PAS domain	1.4E-05	15	21.80	611	657
PAS_4	PAS fold	5E-11	32	23.10	615	725
PAS_9	PAS domain	1.2E-06	18	27.00	618	722
PAS_2	PAS fold	0.033	4	21.40	628	668
PAS_3	PAS fold	0.00045	10	20.70	631	684
PAS	PAS fold	3E-29	91	22.60	737	860
PAS_4	PAS fold	3E-05	14	23.10	751	860
PAS_8	PAS domain	0.0017	8	21.80	751	797
PAS_9	PAS domain	1.5E-06	18	27.00	751	859
PAS_3	PAS fold	0.022	5	20.70	764	857
GAF	GAF domain	0.57	0	20.90	849	872
HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	1.7E-11	34	21.30	994	1093