c2pfam

AT5G37780.1 :

Domain Description Evalue Bits GA Start End
DUF5663 Protein of unknown function (DUF5663) 0.0039 9 23.70 1 17
EF-hand_4 Cytoskeletal-regulatory complex EF hand 8.3E-05 13 21.30 4 73
EFhand_Ca_insen Ca2+ insensitive EF hand 0.89 1 20.80 6 59
DUF4497 Protein of unknown function (DUF4497) 0.023 6 30.50 10 43
EF-hand_7 EF-hand domain pair 3.1E-18 57 30.00 12 73
EF-hand_1 EF hand 3.7E-12 36 25.40 12 40
EF-hand_6 EF-hand domain 2E-11 34 25.00 12 41
EF-hand_8 EF-hand domain pair 0.0027 8 28.00 12 32
EF-hand_5 EF hand 1.9E-07 21 25.90 14 37
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 7.3E-05 14 21.40 15 70
Caleosin Caleosin related protein 0.00039 11 20.60 15 47
EF-hand_9 EF-hand domain 1.2E-11 36 37.00 16 75
EF-hand_11 EF-hand domain 0.065 5 21.70 17 75
MotA_activ Transcription factor MotA, activation domain 0.27 2 26.10 19 36
Dockerin_1 Dockerin type I repeat 0.71 1 20.50 20 40
Dockerin_1 Dockerin type I repeat 0.03 5 20.50 21 69
Fe_hyd_lg_C Iron only hydrogenase large subunit, C-terminal domain 0.00016 12 21.70 22 111
TerB Tellurite resistance protein TerB 0.011 7 22.80 25 90
EF-hand_8 EF-hand domain pair 1.2E-14 45 28.00 25 75
SurA_N_2 SurA N-terminal domain 0.028 5 28.50 27 58
RNA_pol_Rpb4 RNA polymerase Rpb4 0.0015 10 21.60 27 57
DUF1811 Protein of unknown function (DUF1811) 0.048 5 20.60 28 57
UPF0154 Uncharacterised protein family (UPF0154) 0.00014 13 20.90 28 56
RuvA_C RuvA, C-terminal domain 0.81 1 20.70 45 58
DUF1103 Repeat of unknown function (DUF1103) 3.8E-05 14 23.40 47 143
Caleosin Caleosin related protein 0.51 1 20.60 47 81
DUF5132 Protein of unknown function (DUF5132) 0.022 6 25.00 48 58
EF-hand_1 EF hand 2.3E-11 34 25.40 48 75
EF-hand_6 EF-hand domain 1.5E-05 16 25.00 49 75
EF-hand_5 EF hand 1.3E-07 22 25.90 49 73
Poly_export Polysaccharide biosynthesis/export protein 0.0011 10 20.60 55 92
DUF5580 Family of unknown function (DUF5580) 5.4E-07 19 83.40 56 146
DUF4497 Protein of unknown function (DUF4497) 0.0014 10 30.50 60 118
DUF5663 Protein of unknown function (DUF5663) 0.34 2 23.70 71 127
EFhand_Ca_insen Ca2+ insensitive EF hand 1.2E-06 20 20.80 79 147
SPARC_Ca_bdg Secreted protein acidic and rich in cysteine Ca binding region 2E-06 19 21.40 81 144
Dockerin_1 Dockerin type I repeat 0.31 2 20.50 82 111
EF-hand_8 EF-hand domain pair 0.00057 11 28.00 82 102
EF-hand_7 EF-hand domain pair 3.5E-22 70 30.00 83 146
EF-hand_4 Cytoskeletal-regulatory complex EF hand 3.7E-08 24 21.30 84 146
EF-hand_6 EF-hand domain 6E-11 32 25.00 85 114
EF-hand_1 EF hand 2.8E-12 36 25.40 85 112
EF-hand_5 EF hand 4.8E-09 26 25.90 86 110
Caleosin Caleosin related protein 0.021 6 20.60 86 114
EF-hand_11 EF-hand domain 4.4E-06 18 21.70 87 144
EF-hand_9 EF-hand domain 9.3E-09 27 37.00 89 148
SurA_N_2 SurA N-terminal domain 0.00093 10 28.50 90 144
Dockerin_1 Dockerin type I repeat 3.9E-05 15 20.50 94 138
MotA_activ Transcription factor MotA, activation domain 9.3E-05 13 26.10 96 138
EF-hand_8 EF-hand domain pair 2.8E-16 50 28.00 97 145
UPF0154 Uncharacterised protein family (UPF0154) 0.0068 7 20.90 98 128
DUF5132 Protein of unknown function (DUF5132) 0.028 5 25.00 98 119
TerB Tellurite resistance protein TerB 0.011 7 22.80 101 148
RNA_pol_Rpb4 RNA polymerase Rpb4 0.00087 10 21.60 102 128
DUF1811 Protein of unknown function (DUF1811) 0.025 6 20.60 102 131
RuvA_C RuvA, C-terminal domain 0.0063 8 20.70 103 129
DUF5663 Protein of unknown function (DUF5663) 0.21 3 23.70 111 143
EF-hand_1 EF hand 5.4E-13 39 25.40 121 148
EF-hand_5 EF hand 1.1E-07 22 25.90 124 146
Poly_export Polysaccharide biosynthesis/export protein 0.12 4 20.60 124 141
EF-hand_6 EF-hand domain 4.1E-06 17 25.00 125 147

149

DUF5663
EF-hand_4
EFhand_Ca_insen
DUF4497
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_5
SPARC_Ca_bdg
Caleosin
EF-hand_9
EF-hand_11
MotA_activ
Dockerin_1
Dockerin_1
Fe_hyd_lg_C
TerB
EF-hand_8
SurA_N_2
RNA_pol_Rpb4
DUF1811
UPF0154
RuvA_C
DUF1103
Caleosin
DUF5132
EF-hand_1
EF-hand_6
EF-hand_5
Poly_export
DUF5580
DUF4497
DUF5663
EFhand_Ca_insen
SPARC_Ca_bdg
Dockerin_1
EF-hand_8
EF-hand_7
EF-hand_4
EF-hand_6
EF-hand_1
EF-hand_5
Caleosin
EF-hand_11
EF-hand_9
SurA_N_2
Dockerin_1
MotA_activ
EF-hand_8
UPF0154
DUF5132
TerB
RNA_pol_Rpb4
DUF1811
RuvA_C
DUF5663
EF-hand_1
EF-hand_5
Poly_export
EF-hand_6

References:

Dockerin_1
10390637 The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides [In Process Citation] Trends Microbiol 1999;7:275-281.
10898940 Secondary structure and calcium-induced folding of the Clostridium thermocellum dockerin domain determined by NMR spectroscopy. Arch Biochem Biophys 2000;379:237-244.

EF-hand_8

EF-hand_7

EF-hand_6

EF-hand_5

EF-hand_4

TerB
3049247 The nucleotide sequence of a plasmid determinant for resistance to tellurium anions. Gene 1988;66:245-258.
10069007 In vivo and in vitro cloning and phenotype characterization of tellurite resistance determinant conferred by plasmid pTE53 of a clinical isolate of Escherichia coli. Folia Microbiol (Praha) 1998;43:589-599.

SurA_N_2

Poly_export
8759852 Organization of the Escherichia coli K-12 gene cluster responsible for production of the extracellular polysaccharide colanic acid. J Bacteriol 1996;178:4885-4893.

EF-hand_1

DUF5132

Fe_hyd_lg_C
9836629 X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 angstrom resolution. Science 1998;282:1853-1858.

EF-hand_9

DUF5663

SPARC_Ca_bdg
16121393 The C-terminal Ca2+-binding domain of SPARC confers anti-spreading activity to human urothelial cells. J Cell Physiol. 2006;206:211-220.

UPF0154

DUF1103

DUF1811

MotA_activ
9155025 The activation domain of the MotA transcription factor from bacteriophage T4. EMBO J. 1997;16:1992-2003.

DUF5580

Caleosin
11171180 New insights into the mechanisms of lipid-body biogenesis in plants and other organisms. Biochem Soc Trans 2000;28:710-711.

DUF4497

EFhand_Ca_insen
11573089 Ca2+-independent binding of an EF-hand domain to a novel motif in the alpha-actinin-titin complex. Nat Struct Biol. 2001;8:853-857.

RuvA_C
10890893 Crystal structure of the holliday junction DNA in complex with a single RuvA tetramer. Proc Natl Acad Sci U S A 2000;97:8257-8262.

EF-hand_11

RNA_pol_Rpb4
11741548 Structure of an archaeal homolog of the eukaryotic RNA polymerase II RPB4/RPB7 complex. Mol Cell 2001;8:1137-1143.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
8065349 C25, an essential RNA polymerase III subunit related to the RNA polymerase II subunit RPB7. Mol Cell Biol. 1994;14:6164-6170.
12482973 An Rpb4/Rpb7-like complex in yeast RNA polymerase III contains the orthologue of mammalian CGRP-RCP. Mol Cell Biol. 2003;23:195-205.
16818233 Structural biology of RNA polymerase III: subcomplex C17/25 X-ray structure and 11 subunit enzyme model. Mol Cell. 2006;23:71-81.

Domain	Description	Evalue	Bits	GA	Start	End
DUF5663	Protein of unknown function (DUF5663)	0.0039	9	23.70	1	17
EF-hand_4	Cytoskeletal-regulatory complex EF hand	8.3E-05	13	21.30	4	73
EFhand_Ca_insen	Ca2+ insensitive EF hand	0.89	1	20.80	6	59
DUF4497	Protein of unknown function (DUF4497)	0.023	6	30.50	10	43
EF-hand_7	EF-hand domain pair	3.1E-18	57	30.00	12	73
EF-hand_1	EF hand	3.7E-12	36	25.40	12	40
EF-hand_6	EF-hand domain	2E-11	34	25.00	12	41
EF-hand_8	EF-hand domain pair	0.0027	8	28.00	12	32
EF-hand_5	EF hand	1.9E-07	21	25.90	14	37
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	7.3E-05	14	21.40	15	70
Caleosin	Caleosin related protein	0.00039	11	20.60	15	47
EF-hand_9	EF-hand domain	1.2E-11	36	37.00	16	75
EF-hand_11	EF-hand domain	0.065	5	21.70	17	75
MotA_activ	Transcription factor MotA, activation domain	0.27	2	26.10	19	36
Dockerin_1	Dockerin type I repeat	0.71	1	20.50	20	40
Dockerin_1	Dockerin type I repeat	0.03	5	20.50	21	69
Fe_hyd_lg_C	Iron only hydrogenase large subunit, C-terminal domain	0.00016	12	21.70	22	111
TerB	Tellurite resistance protein TerB	0.011	7	22.80	25	90
EF-hand_8	EF-hand domain pair	1.2E-14	45	28.00	25	75
SurA_N_2	SurA N-terminal domain	0.028	5	28.50	27	58
RNA_pol_Rpb4	RNA polymerase Rpb4	0.0015	10	21.60	27	57
DUF1811	Protein of unknown function (DUF1811)	0.048	5	20.60	28	57
UPF0154	Uncharacterised protein family (UPF0154)	0.00014	13	20.90	28	56
RuvA_C	RuvA, C-terminal domain	0.81	1	20.70	45	58
DUF1103	Repeat of unknown function (DUF1103)	3.8E-05	14	23.40	47	143
Caleosin	Caleosin related protein	0.51	1	20.60	47	81
DUF5132	Protein of unknown function (DUF5132)	0.022	6	25.00	48	58
EF-hand_1	EF hand	2.3E-11	34	25.40	48	75
EF-hand_6	EF-hand domain	1.5E-05	16	25.00	49	75
EF-hand_5	EF hand	1.3E-07	22	25.90	49	73
Poly_export	Polysaccharide biosynthesis/export protein	0.0011	10	20.60	55	92
DUF5580	Family of unknown function (DUF5580)	5.4E-07	19	83.40	56	146
DUF4497	Protein of unknown function (DUF4497)	0.0014	10	30.50	60	118
DUF5663	Protein of unknown function (DUF5663)	0.34	2	23.70	71	127
EFhand_Ca_insen	Ca2+ insensitive EF hand	1.2E-06	20	20.80	79	147
SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	2E-06	19	21.40	81	144
Dockerin_1	Dockerin type I repeat	0.31	2	20.50	82	111
EF-hand_8	EF-hand domain pair	0.00057	11	28.00	82	102
EF-hand_7	EF-hand domain pair	3.5E-22	70	30.00	83	146
EF-hand_4	Cytoskeletal-regulatory complex EF hand	3.7E-08	24	21.30	84	146
EF-hand_6	EF-hand domain	6E-11	32	25.00	85	114
EF-hand_1	EF hand	2.8E-12	36	25.40	85	112
EF-hand_5	EF hand	4.8E-09	26	25.90	86	110
Caleosin	Caleosin related protein	0.021	6	20.60	86	114
EF-hand_11	EF-hand domain	4.4E-06	18	21.70	87	144
EF-hand_9	EF-hand domain	9.3E-09	27	37.00	89	148
SurA_N_2	SurA N-terminal domain	0.00093	10	28.50	90	144
Dockerin_1	Dockerin type I repeat	3.9E-05	15	20.50	94	138
MotA_activ	Transcription factor MotA, activation domain	9.3E-05	13	26.10	96	138
EF-hand_8	EF-hand domain pair	2.8E-16	50	28.00	97	145
UPF0154	Uncharacterised protein family (UPF0154)	0.0068	7	20.90	98	128
DUF5132	Protein of unknown function (DUF5132)	0.028	5	25.00	98	119
TerB	Tellurite resistance protein TerB	0.011	7	22.80	101	148
RNA_pol_Rpb4	RNA polymerase Rpb4	0.00087	10	21.60	102	128
DUF1811	Protein of unknown function (DUF1811)	0.025	6	20.60	102	131
RuvA_C	RuvA, C-terminal domain	0.0063	8	20.70	103	129
DUF5663	Protein of unknown function (DUF5663)	0.21	3	23.70	111	143
EF-hand_1	EF hand	5.4E-13	39	25.40	121	148
EF-hand_5	EF hand	1.1E-07	22	25.90	124	146
Poly_export	Polysaccharide biosynthesis/export protein	0.12	4	20.60	124	141
EF-hand_6	EF-hand domain	4.1E-06	17	25.00	125	147