c2pfam

AT5G38350.1 :

Domain Description Evalue Bits GA Start End
AAA_16 AAA ATPase domain 2.1E-06 18 32.60 27 85
ATPase_2 ATPase domain predominantly from Archaea 5.6E-05 13 33.20 33 108
DUF87 Domain of unknown function DUF87 0.0014 9 20.90 38 72
Rad17 Rad17 cell cycle checkpoint protein 2.6E-07 21 19.70 40 146
NB-ARC NB-ARC domain 4E-21 65 23.50 41 268
Pox_A32 Poxvirus A32 protein 5.6E-05 13 20.50 43 143
ABC_tran ABC transporter 6.5E-06 17 23.10 47 83
AAA_14 AAA domain 4.2E-05 14 27.00 47 175
AAA_24 AAA domain 1.5E-05 15 27.00 48 76
AAA_22 AAA domain 7.4E-05 13 27.00 48 82
PRK Phosphoribulokinase / Uridine kinase family 9E-05 12 20.60 48 90
AAA_18 AAA domain 6.1E-06 17 29.40 49 173
AAA ATPase family associated with various cellular activities (AAA) 1.3E-05 16 20.80 51 144
RNA_helicase RNA helicase 4.9E-05 14 21.50 51 94
LRR_4 Leucine Rich repeats (2 copies) 0.83 1 27.00 388 411
LRR_8 Leucine rich repeat 0.045 4 27.00 395 409
LRR_3 Leucine Rich Repeat 2E-08 24 20.20 456 475
LRR_8 Leucine rich repeat 0.0034 7 27.00 459 511
LRR_4 Leucine Rich repeats (2 copies) 0.00018 12 27.00 479 513
LRR_8 Leucine rich repeat 0.0094 6 27.00 502 560
LRR_4 Leucine Rich repeats (2 copies) 0.00096 10 27.00 526 567
DUF87 Domain of unknown function DUF87 0.29 1 20.90 540 640
LRR_4 Leucine Rich repeats (2 copies) 0.056 4 27.00 569 608
LRR_8 Leucine rich repeat 0.0024 8 27.00 570 612
LRR_8 Leucine rich repeat 0.0055 7 27.00 612 646
LRR_4 Leucine Rich repeats (2 copies) 0.003 8 27.00 616 655
LRR_4 Leucine Rich repeats (2 copies) 0.7 1 27.00 658 677

833

AAA_16
ATPase_2
DUF87
Rad17
NB-ARC
Pox_A32
ABC_tran
AAA_14
AAA_24
AAA_22
PRK
AAA_18
AAA
RNA_helicase
LRR_4
LRR_8
LRR_3
LRR_8
LRR_4
LRR_8
LRR_4
DUF87
LRR_4
LRR_8
LRR_8
LRR_4
LRR_4

References:

AAA_16

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

AAA_14

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

LRR_8

PRK
9548738 The crystal structure of phosphoribulokinase from Rhodobacter sphaeroides reveals a fold similar to that of adenylate kinase. Biochemistry 1998;37:5074-5085.
17143579 Functional characterization of a gene encoding a dual domain for uridine kinase and uracil phosphoribosyltransferase in Arabidopsis thaliana. Plant Mol Biol. 2007;63:465-477.

LRR_4

ATPase_2

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

DUF87

AAA_24

AAA_22

Pox_A32
9621036 DNA packaging mutant: repression of the vaccinia virus A32 gene results in noninfectious, DNA-deficient, spherical, enveloped particles. J Virol 1998;72:5769-5780.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_16	AAA ATPase domain	2.1E-06	18	32.60	27	85
ATPase_2	ATPase domain predominantly from Archaea	5.6E-05	13	33.20	33	108
DUF87	Domain of unknown function DUF87	0.0014	9	20.90	38	72
Rad17	Rad17 cell cycle checkpoint protein	2.6E-07	21	19.70	40	146
NB-ARC	NB-ARC domain	4E-21	65	23.50	41	268
Pox_A32	Poxvirus A32 protein	5.6E-05	13	20.50	43	143
ABC_tran	ABC transporter	6.5E-06	17	23.10	47	83
AAA_14	AAA domain	4.2E-05	14	27.00	47	175
AAA_24	AAA domain	1.5E-05	15	27.00	48	76
AAA_22	AAA domain	7.4E-05	13	27.00	48	82
PRK	Phosphoribulokinase / Uridine kinase family	9E-05	12	20.60	48	90
AAA_18	AAA domain	6.1E-06	17	29.40	49	173
AAA	ATPase family associated with various cellular activities (AAA)	1.3E-05	16	20.80	51	144
RNA_helicase	RNA helicase	4.9E-05	14	21.50	51	94
LRR_4	Leucine Rich repeats (2 copies)	0.83	1	27.00	388	411
LRR_8	Leucine rich repeat	0.045	4	27.00	395	409
LRR_3	Leucine Rich Repeat	2E-08	24	20.20	456	475
LRR_8	Leucine rich repeat	0.0034	7	27.00	459	511
LRR_4	Leucine Rich repeats (2 copies)	0.00018	12	27.00	479	513
LRR_8	Leucine rich repeat	0.0094	6	27.00	502	560
LRR_4	Leucine Rich repeats (2 copies)	0.00096	10	27.00	526	567
DUF87	Domain of unknown function DUF87	0.29	1	20.90	540	640
LRR_4	Leucine Rich repeats (2 copies)	0.056	4	27.00	569	608
LRR_8	Leucine rich repeat	0.0024	8	27.00	570	612
LRR_8	Leucine rich repeat	0.0055	7	27.00	612	646
LRR_4	Leucine Rich repeats (2 copies)	0.003	8	27.00	616	655
LRR_4	Leucine Rich repeats (2 copies)	0.7	1	27.00	658	677