c2pfam

AT5G39510.1 :

Domain Description Evalue Bits GA Start End
V-SNARE Vesicle transport v-SNARE protein N-terminus 3.1E-27 85 21.80 12 90
Arg_decarbox_C Arginine decarboxylase C-terminal helical extension 0.00047 11 23.30 14 46
Exonuc_VII_L Exonuclease VII, large subunit 0.0018 8 21.70 14 136
Laminin_II Laminin Domain II 0.066 3 27.70 14 92
KxDL Uncharacterized conserved protein 0.0087 7 23.80 19 60
Cauli_AT Aphid transmission protein 0.00024 11 21.10 26 91
Prominin Prominin 0.032 2 31.00 28 92
Exo84_C Exocyst component 84 C-terminal 0.00025 11 32.00 33 107
XhlA Haemolysin XhlA 0.64 1 29.10 35 55
Wzz Chain length determinant protein 1 0 22.00 63 97
XhlA Haemolysin XhlA 0.13 3 29.10 71 93
Laminin_II Laminin Domain II 0.39 1 27.70 72 93
KxDL Uncharacterized conserved protein 0.099 3 23.80 74 93
TPR_20 Tetratricopeptide repeat 0.00014 12 25.00 95 145
DUF2721 Protein of unknown function (DUF2721) 0.00044 10 27.20 123 215
KxDL Uncharacterized conserved protein 0.77 0 23.80 125 147
V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 1.2E-27 86 24.80 128 193
Exo84_C Exocyst component 84 C-terminal 0.93 -1 32.00 129 170
Sec20 Sec20 8.9E-09 25 27.00 134 215
Laminin_II Laminin Domain II 0.0046 7 27.70 141 191
Fusion_gly Fusion glycoprotein F0 7.6E-05 11 19.30 165 214
KxDL Uncharacterized conserved protein 0.39 1 23.80 165 196
Prominin Prominin 0.00014 10 31.00 167 219
Wzz Chain length determinant protein 0.0013 9 22.00 186 217
Pox_EPC_I2-L1 Poxvirus entry protein complex L1 and I2 5.7E-05 14 23.40 191 220
XhlA Haemolysin XhlA 0.00017 12 29.10 194 214

221

V-SNARE
Arg_decarbox_C
Exonuc_VII_L
Laminin_II
KxDL
Cauli_AT
Prominin
Exo84_C
XhlA
Wzz
XhlA
Laminin_II
KxDL
TPR_20
DUF2721
KxDL
V-SNARE_C
Exo84_C
Sec20
Laminin_II
Fusion_gly
KxDL
Prominin
Wzz
Pox_EPC_I2-L1
XhlA

References:

DUF2721

Prominin
11467842 Rat prominin, like its mouse and human orthologues, is a pentaspan membrane glycoprotein. Biochem Biophys Res Commun 2001;285:939-944.
10587575 A frameshift mutation in prominin (mouse)-like 1 causes human retinal degeneration. Hum Mol Genet 2000;9:27-34.

Exo84_C

TPR_20

Wzz
9573151 The wzz (cld) protein in Escherichia coli: amino acid sequence variation determines O-antigen chain length specificity. J Bacteriol 1998;180:2670-2675.

Pox_EPC_I2-L1

Arg_decarbox_C

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

Laminin_II
3182802 Laminin, a multidomain protein. The A chain has a unique globular domain and homology with the basement membrane proteoglycan and the laminin B chains. J Biol Chem 1988;263:16536-16544.

Fusion_gly

XhlA
15659065 Expression and activity of a Xenorhabdus nematophila haemolysin required for full virulence towards Manduca sexta insects. Cell Microbiol. 2005;7:209-219.

KxDL

Sec20
8334998 The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J 1993;12:2831-2840.

Cauli_AT
10601029 Aphid transmission of cauliflower mosaic virus requires the viral PIII protein. EMBO J 1999;18:7077-7085.
6311674 Aphid transmission and a polypeptide are specified by a defined region of the cauliflower mosaic virus genome. Gene 1983;23:15-23.

V-SNARE_C
19064671 Binding interactions control SNARE specificity in vivo. J Cell Biol. 2008;183:1089-1100.

V-SNARE
10359592 The Saccharomyces cerevisiae v-SNARE Vti1p is required for multiple membrane transport pathways to the vacuole. Mol Biol Cell 1999;10:1719-1732.

Domain	Description	Evalue	Bits	GA	Start	End
V-SNARE	Vesicle transport v-SNARE protein N-terminus	3.1E-27	85	21.80	12	90
Arg_decarbox_C	Arginine decarboxylase C-terminal helical extension	0.00047	11	23.30	14	46
Exonuc_VII_L	Exonuclease VII, large subunit	0.0018	8	21.70	14	136
Laminin_II	Laminin Domain II	0.066	3	27.70	14	92
KxDL	Uncharacterized conserved protein	0.0087	7	23.80	19	60
Cauli_AT	Aphid transmission protein	0.00024	11	21.10	26	91
Prominin	Prominin	0.032	2	31.00	28	92
Exo84_C	Exocyst component 84 C-terminal	0.00025	11	32.00	33	107
XhlA	Haemolysin XhlA	0.64	1	29.10	35	55
Wzz	Chain length determinant protein	1	0	22.00	63	97
XhlA	Haemolysin XhlA	0.13	3	29.10	71	93
Laminin_II	Laminin Domain II	0.39	1	27.70	72	93
KxDL	Uncharacterized conserved protein	0.099	3	23.80	74	93
TPR_20	Tetratricopeptide repeat	0.00014	12	25.00	95	145
DUF2721	Protein of unknown function (DUF2721)	0.00044	10	27.20	123	215
KxDL	Uncharacterized conserved protein	0.77	0	23.80	125	147
V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	1.2E-27	86	24.80	128	193
Exo84_C	Exocyst component 84 C-terminal	0.93	-1	32.00	129	170
Sec20	Sec20	8.9E-09	25	27.00	134	215
Laminin_II	Laminin Domain II	0.0046	7	27.70	141	191
Fusion_gly	Fusion glycoprotein F0	7.6E-05	11	19.30	165	214
KxDL	Uncharacterized conserved protein	0.39	1	23.80	165	196
Prominin	Prominin	0.00014	10	31.00	167	219
Wzz	Chain length determinant protein	0.0013	9	22.00	186	217
Pox_EPC_I2-L1	Poxvirus entry protein complex L1 and I2	5.7E-05	14	23.40	191	220
XhlA	Haemolysin XhlA	0.00017	12	29.10	194	214