c2pfam

AT5G39630.1 :

Domain Description Evalue Bits GA Start End
ZnuA Zinc-uptake complex component A periplasmic 0.00064 10 29.00 6 94
Laminin_II Laminin Domain II 0.014 6 27.70 11 89
V-SNARE Vesicle transport v-SNARE protein N-terminus 1.8E-19 61 21.80 12 90
FapA Flagellar Assembly Protein A 0.001 8 36.70 13 95
Cauli_AT Aphid transmission protein 2.5E-05 15 21.10 26 90
YtxH YtxH-like protein 0.11 4 37.50 30 89
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.17 3 28.70 32 50
BORCS8 BLOC-1-related complex sub-unit 8 3.9E-05 14 25.00 33 86
V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 0.86 1 24.80 35 56
Spc7 Spc7 kinetochore protein 0.02 4 34.00 35 142
Exonuc_VII_L Exonuclease VII, large subunit 0.0068 6 21.70 42 166
UPF0242 Uncharacterised protein family (UPF0242) 0.048 4 23.70 45 172
TBCA Tubulin binding cofactor A 0.83 1 23.20 49 89
DUF668 Protein of unknown function (DUF668) 0.0011 10 20.90 60 96
DUF2205 Predicted coiled-coil protein (DUF2205) 0.029 5 26.70 65 123
NRDD Anaerobic ribonucleoside-triphosphate reductase 8.9E-05 12 25.90 67 180
V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 0.22 3 24.80 71 96
DUF2968 Protein of unknown function (DUF2968) 0.00017 12 27.00 72 124
DivIC Septum formation initiator 2.3E-05 15 24.00 75 117
Scaffolding_pro Phi29 scaffolding protein 0.00011 13 25.00 76 139
TMF_TATA_bd TATA element modulatory factor 1 TATA binding 0.0016 9 28.70 77 166
TBCA Tubulin binding cofactor A 0.0016 9 23.20 79 141
FapA Flagellar Assembly Protein A 0.014 4 36.70 95 188
Sec20 Sec20 0.65 1 27.00 100 114
Cauli_AT Aphid transmission protein 0.1 3 21.10 103 144
DUF2205 Predicted coiled-coil protein (DUF2205) 0.071 4 26.70 104 145
DUF668 Protein of unknown function (DUF668) 0.67 1 20.90 112 175
V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 1.5E-22 70 24.80 124 188
Laminin_II Laminin Domain II 0.0009 10 27.70 130 184
Sec20 Sec20 0.00042 11 27.00 134 189
DUF2205 Predicted coiled-coil protein (DUF2205) 0.0025 9 26.70 137 178
DivIC Septum formation initiator 0.23 2 24.00 148 173
Spc7 Spc7 kinetochore protein 0.027 4 34.00 150 180
DUF2968 Protein of unknown function (DUF2968) 0.91 0 27.00 150 165
V-SNARE Vesicle transport v-SNARE protein N-terminus 0.15 3 21.80 152 185
Cauli_AT Aphid transmission protein 0.28 2 21.10 152 183
TBCA Tubulin binding cofactor A 0.031 5 23.20 154 177
BORCS8 BLOC-1-related complex sub-unit 8 0.061 4 25.00 159 184
ZnuA Zinc-uptake complex component A periplasmic 0.23 1 29.00 160 195
HKR_ArcB_TM Histidine kinase receptor ArcB trans-membrane domain 0.00085 11 27.30 180 207

207

ZnuA
Laminin_II
V-SNARE
FapA
Cauli_AT
YtxH
TMF_TATA_bd
BORCS8
V-SNARE_C
Spc7
Exonuc_VII_L
UPF0242
TBCA
DUF668
DUF2205
NRDD
V-SNARE_C
DUF2968
DivIC
Scaffolding_pro
TMF_TATA_bd
TBCA
FapA
Sec20
Cauli_AT
DUF2205
DUF668
V-SNARE_C
Laminin_II
Sec20
DUF2205
DivIC
Spc7
DUF2968
V-SNARE
Cauli_AT
TBCA
BORCS8
ZnuA
HKR_ArcB_TM

References:

UPF0242

ZnuA

Cauli_AT
10601029 Aphid transmission of cauliflower mosaic virus requires the viral PIII protein. EMBO J 1999;18:7077-7085.
6311674 Aphid transmission and a polypeptide are specified by a defined region of the cauliflower mosaic virus genome. Gene 1983;23:15-23.

YtxH

BORCS8

HKR_ArcB_TM

DUF668

Scaffolding_pro
12778115 Bacteriophage phi29 scaffolding protein gp7 before and after prohead assembly. Nat Struct Biol. 2003;10:572-576.

TBCA
10542094 Crystal structure of the post-chaperonin beta-tubulin binding cofactor Rbl2p. Nat Struct Biol 1999;6:1029-1032.

DivIC
8113187 Characterization of a cell division gene from Bacillus subtilis that is required for vegetative and sporulation septum formation. J Bacteriol 1994;176:1451-1459.

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

Laminin_II
3182802 Laminin, a multidomain protein. The A chain has a unique globular domain and homology with the basement membrane proteoglycan and the laminin B chains. J Biol Chem 1988;263:16536-16544.

DUF2205

DUF2968

NRDD

FapA

Sec20
8334998 The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J 1993;12:2831-2840.

TMF_TATA_bd
1409643 Cloning and chromosomal mapping of a human immunodeficiency virus 1 "TATA" element modulatory factor. Proc Natl Acad Sci U S A. 1992;89:9372-9376.
15128430 TMF is a golgin that binds Rab6 and influences Golgi morphology. BMC Cell Biol. 2004;5:18.
18182439 Localization and domain characterization of Arabidopsis golgin candidates. J Exp Bot. 2007;58:4373-4386.

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

V-SNARE_C
19064671 Binding interactions control SNARE specificity in vivo. J Cell Biol. 2008;183:1089-1100.

V-SNARE
10359592 The Saccharomyces cerevisiae v-SNARE Vti1p is required for multiple membrane transport pathways to the vacuole. Mol Biol Cell 1999;10:1719-1732.

Domain	Description	Evalue	Bits	GA	Start	End
ZnuA	Zinc-uptake complex component A periplasmic	0.00064	10	29.00	6	94
Laminin_II	Laminin Domain II	0.014	6	27.70	11	89
V-SNARE	Vesicle transport v-SNARE protein N-terminus	1.8E-19	61	21.80	12	90
FapA	Flagellar Assembly Protein A	0.001	8	36.70	13	95
Cauli_AT	Aphid transmission protein	2.5E-05	15	21.10	26	90
YtxH	YtxH-like protein	0.11	4	37.50	30	89
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.17	3	28.70	32	50
BORCS8	BLOC-1-related complex sub-unit 8	3.9E-05	14	25.00	33	86
V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	0.86	1	24.80	35	56
Spc7	Spc7 kinetochore protein	0.02	4	34.00	35	142
Exonuc_VII_L	Exonuclease VII, large subunit	0.0068	6	21.70	42	166
UPF0242	Uncharacterised protein family (UPF0242)	0.048	4	23.70	45	172
TBCA	Tubulin binding cofactor A	0.83	1	23.20	49	89
DUF668	Protein of unknown function (DUF668)	0.0011	10	20.90	60	96
DUF2205	Predicted coiled-coil protein (DUF2205)	0.029	5	26.70	65	123
NRDD	Anaerobic ribonucleoside-triphosphate reductase	8.9E-05	12	25.90	67	180
V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	0.22	3	24.80	71	96
DUF2968	Protein of unknown function (DUF2968)	0.00017	12	27.00	72	124
DivIC	Septum formation initiator	2.3E-05	15	24.00	75	117
Scaffolding_pro	Phi29 scaffolding protein	0.00011	13	25.00	76	139
TMF_TATA_bd	TATA element modulatory factor 1 TATA binding	0.0016	9	28.70	77	166
TBCA	Tubulin binding cofactor A	0.0016	9	23.20	79	141
FapA	Flagellar Assembly Protein A	0.014	4	36.70	95	188
Sec20	Sec20	0.65	1	27.00	100	114
Cauli_AT	Aphid transmission protein	0.1	3	21.10	103	144
DUF2205	Predicted coiled-coil protein (DUF2205)	0.071	4	26.70	104	145
DUF668	Protein of unknown function (DUF668)	0.67	1	20.90	112	175
V-SNARE_C	Snare region anchored in the vesicle membrane C-terminus	1.5E-22	70	24.80	124	188
Laminin_II	Laminin Domain II	0.0009	10	27.70	130	184
Sec20	Sec20	0.00042	11	27.00	134	189
DUF2205	Predicted coiled-coil protein (DUF2205)	0.0025	9	26.70	137	178
DivIC	Septum formation initiator	0.23	2	24.00	148	173
Spc7	Spc7 kinetochore protein	0.027	4	34.00	150	180
DUF2968	Protein of unknown function (DUF2968)	0.91	0	27.00	150	165
V-SNARE	Vesicle transport v-SNARE protein N-terminus	0.15	3	21.80	152	185
Cauli_AT	Aphid transmission protein	0.28	2	21.10	152	183
TBCA	Tubulin binding cofactor A	0.031	5	23.20	154	177
BORCS8	BLOC-1-related complex sub-unit 8	0.061	4	25.00	159	184
ZnuA	Zinc-uptake complex component A periplasmic	0.23	1	29.00	160	195
HKR_ArcB_TM	Histidine kinase receptor ArcB trans-membrane domain	0.00085	11	27.30	180	207