c2pfam

AT5G39680.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.038 4 25.00 68 99
PPR_1 PPR repeat 0.037 4 23.80 73 95
PPR PPR repeat 1.4E-06 18 25.00 73 100
PPR_2 PPR repeat family 1.2E-05 15 30.00 73 109
PPR_2 PPR repeat family 1.2E-05 15 30.00 98 147
PPR PPR repeat 2.7E-05 14 25.00 101 127
PPR_long Pentacotripeptide-repeat region of PRORP 0.84 -1 27.00 118 150
PPR PPR repeat 0.064 4 25.00 140 166
PPR PPR repeat 0.034 5 25.00 204 227
PPR_2 PPR repeat family 0.13 3 30.00 205 240
PPR_3 Pentatricopeptide repeat domain 0.00019 11 25.00 224 284
PPR_long Pentacotripeptide-repeat region of PRORP 0.0019 7 27.00 239 287
PPR_2 PPR repeat family 0.68 0 30.00 242 268
PPR PPR repeat 0.022 5 25.00 245 268
PPR_2 PPR repeat family 0.012 6 30.00 273 297
PPR PPR repeat 0.00035 11 25.00 275 297
PPR_1 PPR repeat 0.0015 8 23.80 277 296
PPR_3 Pentatricopeptide repeat domain 3.2E-06 17 25.00 295 348
PPR_2 PPR repeat family 1.6E-13 41 30.00 302 348
PPR PPR repeat 5.7E-06 16 25.00 307 332
PPR_1 PPR repeat 0.0044 7 23.80 307 329
ATP13 Mitochondrial ATPase expression 0.071 3 26.70 307 329
TPR_14 Tetratricopeptide repeat 0.68 1 23.50 311 329
TPR_2 Tetratricopeptide repeat 0.076 3 22.40 312 328
TPR_19 Tetratricopeptide repeat 0.35 1 25.00 314 329
PPR_long Pentacotripeptide-repeat region of PRORP 0.002 7 27.00 316 346
PPR_1 PPR repeat 0.025 4 23.80 333 347
RRM_2 RNA recognition motif 2 0.00021 11 21.00 336 401
Clathrin Region in Clathrin and VPS 0.00018 11 23.60 364 430
TPR_19 Tetratricopeptide repeat 0.44 1 25.00 375 396
PPR_1 PPR repeat 0.0024 8 23.80 377 399
PPR PPR repeat 9.1E-05 13 25.00 377 400
PPR_2 PPR repeat family 0.00074 10 30.00 377 403
TPR_2 Tetratricopeptide repeat 0.41 1 22.40 382 396
PPR_1 PPR repeat 4.7E-07 19 23.80 402 430
PPR_3 Pentatricopeptide repeat domain 4.3E-05 13 25.00 403 449
PPR_2 PPR repeat family 2.1E-13 40 30.00 403 450
PPR PPR repeat 3.3E-11 33 25.00 405 431
PPR PPR repeat 0.094 3 25.00 441 467
ATP13 Mitochondrial ATPase expression 0.23 1 26.70 441 471
PPR_long Pentacotripeptide-repeat region of PRORP 0.0016 8 27.00 445 495
PPR_3 Pentatricopeptide repeat domain 0.045 4 25.00 466 489
PPR_1 PPR repeat 0.00028 11 23.80 470 499
PPR_2 PPR repeat family 0.014 6 30.00 473 517
PPR PPR repeat 0.0029 8 25.00 478 498
TPR_19 Tetratricopeptide repeat 0.69 0 25.00 484 502
ATP13 Mitochondrial ATPase expression 0.024 4 26.70 495 527
PPR_3 Pentatricopeptide repeat domain 0.00077 9 25.00 500 532
PPR_2 PPR repeat family 0.23 2 30.00 506 524
PPR PPR repeat 0.91 0 25.00 508 524
TPR_14 Tetratricopeptide repeat 0.042 5 23.50 509 547
TPR_2 Tetratricopeptide repeat 0.12 3 22.40 515 540
TPR_19 Tetratricopeptide repeat 0.1 3 25.00 529 558
TPR_17 Tetratricopeptide repeat 0.00055 10 24.40 531 554
PPR PPR repeat 0.42 1 25.00 544 572
DYW_deaminase DYW family of nucleic acid deaminases 0 136 31.60 576 699
ATP13 Mitochondrial ATPase expression 0.015 5 26.70 670 696

710

PPR_3
PPR_1
PPR
PPR_2
PPR_2
PPR
PPR_long
PPR
PPR
PPR_2
PPR_3
PPR_long
PPR_2
PPR
PPR_2
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
ATP13
TPR_14
TPR_2
TPR_19
PPR_long
PPR_1
RRM_2
Clathrin
TPR_19
PPR_1
PPR
PPR_2
TPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR
ATP13
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_19
ATP13
PPR_3
PPR_2
PPR
TPR_14
TPR_2
TPR_19
TPR_17
PPR
DYW_deaminase
ATP13

References:

RRM_2
14986133 A description of the Mei2-like protein family; structure, phylogenetic distribution and biological context. Dev Genes Evol 2004; [Epub ahead of print]

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

ATP13

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DYW_deaminase

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.038	4	25.00	68	99
PPR_1	PPR repeat	0.037	4	23.80	73	95
PPR	PPR repeat	1.4E-06	18	25.00	73	100
PPR_2	PPR repeat family	1.2E-05	15	30.00	73	109
PPR_2	PPR repeat family	1.2E-05	15	30.00	98	147
PPR	PPR repeat	2.7E-05	14	25.00	101	127
PPR_long	Pentacotripeptide-repeat region of PRORP	0.84	-1	27.00	118	150
PPR	PPR repeat	0.064	4	25.00	140	166
PPR	PPR repeat	0.034	5	25.00	204	227
PPR_2	PPR repeat family	0.13	3	30.00	205	240
PPR_3	Pentatricopeptide repeat domain	0.00019	11	25.00	224	284
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0019	7	27.00	239	287
PPR_2	PPR repeat family	0.68	0	30.00	242	268
PPR	PPR repeat	0.022	5	25.00	245	268
PPR_2	PPR repeat family	0.012	6	30.00	273	297
PPR	PPR repeat	0.00035	11	25.00	275	297
PPR_1	PPR repeat	0.0015	8	23.80	277	296
PPR_3	Pentatricopeptide repeat domain	3.2E-06	17	25.00	295	348
PPR_2	PPR repeat family	1.6E-13	41	30.00	302	348
PPR	PPR repeat	5.7E-06	16	25.00	307	332
PPR_1	PPR repeat	0.0044	7	23.80	307	329
ATP13	Mitochondrial ATPase expression	0.071	3	26.70	307	329
TPR_14	Tetratricopeptide repeat	0.68	1	23.50	311	329
TPR_2	Tetratricopeptide repeat	0.076	3	22.40	312	328
TPR_19	Tetratricopeptide repeat	0.35	1	25.00	314	329
PPR_long	Pentacotripeptide-repeat region of PRORP	0.002	7	27.00	316	346
PPR_1	PPR repeat	0.025	4	23.80	333	347
RRM_2	RNA recognition motif 2	0.00021	11	21.00	336	401
Clathrin	Region in Clathrin and VPS	0.00018	11	23.60	364	430
TPR_19	Tetratricopeptide repeat	0.44	1	25.00	375	396
PPR_1	PPR repeat	0.0024	8	23.80	377	399
PPR	PPR repeat	9.1E-05	13	25.00	377	400
PPR_2	PPR repeat family	0.00074	10	30.00	377	403
TPR_2	Tetratricopeptide repeat	0.41	1	22.40	382	396
PPR_1	PPR repeat	4.7E-07	19	23.80	402	430
PPR_3	Pentatricopeptide repeat domain	4.3E-05	13	25.00	403	449
PPR_2	PPR repeat family	2.1E-13	40	30.00	403	450
PPR	PPR repeat	3.3E-11	33	25.00	405	431
PPR	PPR repeat	0.094	3	25.00	441	467
ATP13	Mitochondrial ATPase expression	0.23	1	26.70	441	471
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0016	8	27.00	445	495
PPR_3	Pentatricopeptide repeat domain	0.045	4	25.00	466	489
PPR_1	PPR repeat	0.00028	11	23.80	470	499
PPR_2	PPR repeat family	0.014	6	30.00	473	517
PPR	PPR repeat	0.0029	8	25.00	478	498
TPR_19	Tetratricopeptide repeat	0.69	0	25.00	484	502
ATP13	Mitochondrial ATPase expression	0.024	4	26.70	495	527
PPR_3	Pentatricopeptide repeat domain	0.00077	9	25.00	500	532
PPR_2	PPR repeat family	0.23	2	30.00	506	524
PPR	PPR repeat	0.91	0	25.00	508	524
TPR_14	Tetratricopeptide repeat	0.042	5	23.50	509	547
TPR_2	Tetratricopeptide repeat	0.12	3	22.40	515	540
TPR_19	Tetratricopeptide repeat	0.1	3	25.00	529	558
TPR_17	Tetratricopeptide repeat	0.00055	10	24.40	531	554
PPR	PPR repeat	0.42	1	25.00	544	572
DYW_deaminase	DYW family of nucleic acid deaminases	0	136	31.60	576	699
ATP13	Mitochondrial ATPase expression	0.015	5	26.70	670	696