c2pfam

AT5G39860.1 :

Domain Description Evalue Bits GA Start End
TipAS TipAS antibiotic-recognition domain 0.014 5 29.90 14 57
Nucleopor_Nup85 Nup85 Nucleoporin 9.4E-06 13 19.70 15 79
Syntaxin_2 Syntaxin-like protein 1.7E-05 14 30.50 21 78
HLH Helix-loop-helix DNA-binding domain 3.8E-08 22 20.70 22 59
FlxA FlxA-like protein 4.9E-06 15 26.30 41 83
TipAS TipAS antibiotic-recognition domain 0.00077 9 29.90 45 85
DUF948 Bacterial protein of unknown function (DUF948) 1.9E-05 14 28.10 45 79
HLH Helix-loop-helix DNA-binding domain 0.28 0 20.70 63 77

TipAS
Nucleopor_Nup85
Syntaxin_2
HLH
FlxA
TipAS
DUF948
HLH

References:

HLH
7553065 Transcription factors 2: helix-loop-helix. Protein Profile 1995;2:621-702.

Syntaxin_2

Nucleopor_Nup85
9442897 Yeast genetics to dissect the nuclear pore complex and nucleocytoplasmic trafficking. Annu Rev Genet 1997;31:277-313.
8565072 A novel complex of nucleoporins, which includes Sec13p and a Sec13p homolog, is essential for normal nuclear pores. Cell 1996;84:265-275.
18974315 Structural evidence for common ancestry of the nuclear pore complex and vesicle coats. Science. 2008;322:1369-1373.

FlxA

DUF948

TipAS
12682015 Structural basis for antibiotic recognition by the TipA class of multidrug-resistance transcriptional regulators. EMBO J 2003;22:1824-1834.

Domain	Description	Evalue	Bits	GA	Start	End
TipAS	TipAS antibiotic-recognition domain	0.014	5	29.90	14	57
Nucleopor_Nup85	Nup85 Nucleoporin	9.4E-06	13	19.70	15	79
Syntaxin_2	Syntaxin-like protein	1.7E-05	14	30.50	21	78
HLH	Helix-loop-helix DNA-binding domain	3.8E-08	22	20.70	22	59
FlxA	FlxA-like protein	4.9E-06	15	26.30	41	83
TipAS	TipAS antibiotic-recognition domain	0.00077	9	29.90	45	85
DUF948	Bacterial protein of unknown function (DUF948)	1.9E-05	14	28.10	45	79
HLH	Helix-loop-helix DNA-binding domain	0.28	0	20.70	63	77