c2pfam

AT5G39980.1 :

Domain Description Evalue Bits GA Start End
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 1 -2 21.90 51 124
DUF1348 Protein of unknown function (DUF1348) 1.2E-06 19 21.10 56 149
Clathrin Region in Clathrin and VPS 0.69 0 23.60 75 112
PPR_long Pentacotripeptide-repeat region of PRORP 5.8E-09 26 27.00 121 258
TPR_7 Tetratricopeptide repeat 0.4 1 27.90 125 141
Mtf2 Mtf2 family 0.4 0 27.00 149 171
PPR_2 PPR repeat family 2.4E-15 47 30.00 153 200
PPR_3 Pentatricopeptide repeat domain 3.2E-08 24 25.00 153 202
PPR_1 PPR repeat 0.073 3 23.80 153 182
PPR PPR repeat 0.00026 11 25.00 157 184
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.13 1 25.90 160 211
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.17 1 21.90 169 205
ATP13 Mitochondrial ATPase expression 0.013 5 26.70 184 239
PPR_1 PPR repeat 2.8E-09 27 23.80 186 217
PPR PPR repeat 2E-09 27 25.00 191 220
Clathrin Region in Clathrin and VPS 0.014 5 23.60 192 288
PPR_2 PPR repeat family 2.1E-05 15 30.00 193 232
TPR_15 Tetratricopeptide repeat 0.03 4 26.20 200 276
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.21 1 21.90 212 234
PPR_3 Pentatricopeptide repeat domain 7.5E-13 39 25.00 213 272
PPR_2 PPR repeat family 0.00052 10 30.00 224 259
PPR PPR repeat 0.001 10 25.00 226 256
TPR_7 Tetratricopeptide repeat 0.02 5 27.90 228 249
Mtf2 Mtf2 family 0.023 4 27.00 235 305
PPR_long Pentacotripeptide-repeat region of PRORP 8.9E-11 31 27.00 242 330
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.015 4 21.90 252 276
PPR_1 PPR repeat 9.9E-08 22 23.80 255 286
PPR_2 PPR repeat family 8.1E-14 42 30.00 258 303
PPR PPR repeat 4.4E-10 30 25.00 261 291
PPR_3 Pentatricopeptide repeat domain 3.3E-12 37 25.00 282 342
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.022 4 25.90 283 388
PPR_1 PPR repeat 5.6E-06 16 23.80 290 322
PPR_2 PPR repeat family 1.7E-13 41 30.00 293 339
PPR PPR repeat 1.6E-08 25 25.00 296 326
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.94 -2 21.90 319 345
PPR_1 PPR repeat 0.048 4 23.80 325 353
PPR_3 Pentatricopeptide repeat domain 7.3E-09 26 25.00 328 377
PPR_2 PPR repeat family 1.2E-08 25 30.00 329 368
PPR PPR repeat 6E-07 20 25.00 332 360
PPR_long Pentacotripeptide-repeat region of PRORP 2.7E-14 43 27.00 355 511
PPR_1 PPR repeat 1.5E-07 21 23.80 360 391
PPR_2 PPR repeat family 9.5E-10 29 30.00 363 399
PPR PPR repeat 1.2E-07 22 25.00 366 396
Clathrin Region in Clathrin and VPS 0.0056 7 23.60 367 427
PPR_3 Pentatricopeptide repeat domain 5.1E-16 49 25.00 387 447
PPR_1 PPR repeat 6.2E-07 19 23.80 396 427
PPR_2 PPR repeat family 1.6E-17 54 30.00 399 442
TPR_15 Tetratricopeptide repeat 0.11 2 26.20 399 484
Mtf2 Mtf2 family 0.00063 9 27.00 399 450
PPR PPR repeat 7.6E-10 29 25.00 401 431
DUF1922 Domain of unknown function (DUF1922) 0.0054 7 20.70 407 428
ATP13 Mitochondrial ATPase expression 0.31 1 26.70 408 461
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.026 4 21.90 416 449
FtsK_gamma Ftsk gamma domain 0.31 1 25.10 417 431
PPR_1 PPR repeat 1.2E-10 31 23.80 429 460
PPR PPR repeat 2.7E-07 21 25.00 436 466
PPR_2 PPR repeat family 6.1E-06 17 30.00 438 479
TPR_7 Tetratricopeptide repeat 0.15 3 27.90 443 460
PPR_3 Pentatricopeptide repeat domain 0.008 6 25.00 457 497
PPR_1 PPR repeat 0.0023 8 23.80 465 496
PPR_2 PPR repeat family 0.0083 7 30.00 469 497
PPR PPR repeat 0.00029 11 25.00 471 497
Clathrin Region in Clathrin and VPS 0.44 0 23.60 472 501
Clathrin Region in Clathrin and VPS 0.001 9 23.60 500 561
PPR PPR repeat 0.002 9 25.00 508 530
PPR_1 PPR repeat 0.13 2 23.80 511 526
TPR_7 Tetratricopeptide repeat 0.18 2 27.90 511 529
MRP-S27 Mitochondrial 28S ribosomal protein S27 1.1E-05 14 25.90 522 633
PPR_2 PPR repeat family 9.9E-06 16 30.00 534 571
PPR_1 PPR repeat 0.15 2 23.80 535 563
PPR_3 Pentatricopeptide repeat domain 0.01 6 25.00 536 583
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 1.6E-05 14 21.90 537 584
PPR PPR repeat 2.8E-06 18 25.00 538 566
PPR_long Pentacotripeptide-repeat region of PRORP 0.00017 11 27.00 539 605
TPR_7 Tetratricopeptide repeat 0.15 3 27.90 544 561
PPR_3 Pentatricopeptide repeat domain 0.0046 7 25.00 558 602
ATP13 Mitochondrial ATPase expression 0.0028 8 26.70 564 598
PPR_2 PPR repeat family 9.6E-07 19 30.00 570 608
PPR PPR repeat 3.2E-07 21 25.00 577 602
TPR_7 Tetratricopeptide repeat 0.029 5 27.90 579 596
DUF1922 Domain of unknown function (DUF1922) 0.46 1 20.70 582 601
PPR_long Pentacotripeptide-repeat region of PRORP 0.024 4 27.00 593 672
TPR_15 Tetratricopeptide repeat 8.7E-05 12 26.20 611 663
PPR PPR repeat 0.0015 9 25.00 612 634
TPR_7 Tetratricopeptide repeat 0.45 1 27.90 614 633
PPR PPR repeat 0.0022 9 25.00 650 672
PPR_2 PPR repeat family 0.0046 7 30.00 651 672
PPR_3 Pentatricopeptide repeat domain 0.0088 6 25.00 651 672
PPR_1 PPR repeat 0.055 3 23.80 653 668
FtsK_gamma Ftsk gamma domain 0.022 5 25.10 658 676

678

ECSIT
DUF1348
Clathrin
PPR_long
TPR_7
Mtf2
PPR_2
PPR_3
PPR_1
PPR
MRP-S27
ECSIT
ATP13
PPR_1
PPR
Clathrin
PPR_2
TPR_15
ECSIT
PPR_3
PPR_2
PPR
TPR_7
Mtf2
PPR_long
ECSIT
PPR_1
PPR_2
PPR
PPR_3
MRP-S27
PPR_1
PPR_2
PPR
ECSIT
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
Clathrin
PPR_3
PPR_1
PPR_2
TPR_15
Mtf2
PPR
DUF1922
ATP13
ECSIT
FtsK_gamma
PPR_1
PPR
PPR_2
TPR_7
PPR_3
PPR_1
PPR_2
PPR
Clathrin
Clathrin
PPR
PPR_1
TPR_7
MRP-S27
PPR_2
PPR_1
PPR_3
ECSIT
PPR
PPR_long
TPR_7
PPR_3
ATP13
PPR_2
PPR
TPR_7
DUF1922
PPR_long
TPR_15
PPR
TPR_7
PPR
PPR_2
PPR_3
PPR_1
FtsK_gamma

References:

TPR_7

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

TPR_15

ATP13

FtsK_gamma
17057717 The FtsK gamma domain directs oriented DNA translocation by interacting with KOPS. Nat Struct Mol Biol. 2006;13:965-972.

Mtf2

DUF1348

DUF1922
11017201 Structural proteomics of an archaeon. Nat Struct Biol 2000;7:903-909.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	1	-2	21.90	51	124
DUF1348	Protein of unknown function (DUF1348)	1.2E-06	19	21.10	56	149
Clathrin	Region in Clathrin and VPS	0.69	0	23.60	75	112
PPR_long	Pentacotripeptide-repeat region of PRORP	5.8E-09	26	27.00	121	258
TPR_7	Tetratricopeptide repeat	0.4	1	27.90	125	141
Mtf2	Mtf2 family	0.4	0	27.00	149	171
PPR_2	PPR repeat family	2.4E-15	47	30.00	153	200
PPR_3	Pentatricopeptide repeat domain	3.2E-08	24	25.00	153	202
PPR_1	PPR repeat	0.073	3	23.80	153	182
PPR	PPR repeat	0.00026	11	25.00	157	184
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.13	1	25.90	160	211
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.17	1	21.90	169	205
ATP13	Mitochondrial ATPase expression	0.013	5	26.70	184	239
PPR_1	PPR repeat	2.8E-09	27	23.80	186	217
PPR	PPR repeat	2E-09	27	25.00	191	220
Clathrin	Region in Clathrin and VPS	0.014	5	23.60	192	288
PPR_2	PPR repeat family	2.1E-05	15	30.00	193	232
TPR_15	Tetratricopeptide repeat	0.03	4	26.20	200	276
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.21	1	21.90	212	234
PPR_3	Pentatricopeptide repeat domain	7.5E-13	39	25.00	213	272
PPR_2	PPR repeat family	0.00052	10	30.00	224	259
PPR	PPR repeat	0.001	10	25.00	226	256
TPR_7	Tetratricopeptide repeat	0.02	5	27.90	228	249
Mtf2	Mtf2 family	0.023	4	27.00	235	305
PPR_long	Pentacotripeptide-repeat region of PRORP	8.9E-11	31	27.00	242	330
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.015	4	21.90	252	276
PPR_1	PPR repeat	9.9E-08	22	23.80	255	286
PPR_2	PPR repeat family	8.1E-14	42	30.00	258	303
PPR	PPR repeat	4.4E-10	30	25.00	261	291
PPR_3	Pentatricopeptide repeat domain	3.3E-12	37	25.00	282	342
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.022	4	25.90	283	388
PPR_1	PPR repeat	5.6E-06	16	23.80	290	322
PPR_2	PPR repeat family	1.7E-13	41	30.00	293	339
PPR	PPR repeat	1.6E-08	25	25.00	296	326
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.94	-2	21.90	319	345
PPR_1	PPR repeat	0.048	4	23.80	325	353
PPR_3	Pentatricopeptide repeat domain	7.3E-09	26	25.00	328	377
PPR_2	PPR repeat family	1.2E-08	25	30.00	329	368
PPR	PPR repeat	6E-07	20	25.00	332	360
PPR_long	Pentacotripeptide-repeat region of PRORP	2.7E-14	43	27.00	355	511
PPR_1	PPR repeat	1.5E-07	21	23.80	360	391
PPR_2	PPR repeat family	9.5E-10	29	30.00	363	399
PPR	PPR repeat	1.2E-07	22	25.00	366	396
Clathrin	Region in Clathrin and VPS	0.0056	7	23.60	367	427
PPR_3	Pentatricopeptide repeat domain	5.1E-16	49	25.00	387	447
PPR_1	PPR repeat	6.2E-07	19	23.80	396	427
PPR_2	PPR repeat family	1.6E-17	54	30.00	399	442
TPR_15	Tetratricopeptide repeat	0.11	2	26.20	399	484
Mtf2	Mtf2 family	0.00063	9	27.00	399	450
PPR	PPR repeat	7.6E-10	29	25.00	401	431
DUF1922	Domain of unknown function (DUF1922)	0.0054	7	20.70	407	428
ATP13	Mitochondrial ATPase expression	0.31	1	26.70	408	461
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.026	4	21.90	416	449
FtsK_gamma	Ftsk gamma domain	0.31	1	25.10	417	431
PPR_1	PPR repeat	1.2E-10	31	23.80	429	460
PPR	PPR repeat	2.7E-07	21	25.00	436	466
PPR_2	PPR repeat family	6.1E-06	17	30.00	438	479
TPR_7	Tetratricopeptide repeat	0.15	3	27.90	443	460
PPR_3	Pentatricopeptide repeat domain	0.008	6	25.00	457	497
PPR_1	PPR repeat	0.0023	8	23.80	465	496
PPR_2	PPR repeat family	0.0083	7	30.00	469	497
PPR	PPR repeat	0.00029	11	25.00	471	497
Clathrin	Region in Clathrin and VPS	0.44	0	23.60	472	501
Clathrin	Region in Clathrin and VPS	0.001	9	23.60	500	561
PPR	PPR repeat	0.002	9	25.00	508	530
PPR_1	PPR repeat	0.13	2	23.80	511	526
TPR_7	Tetratricopeptide repeat	0.18	2	27.90	511	529
MRP-S27	Mitochondrial 28S ribosomal protein S27	1.1E-05	14	25.90	522	633
PPR_2	PPR repeat family	9.9E-06	16	30.00	534	571
PPR_1	PPR repeat	0.15	2	23.80	535	563
PPR_3	Pentatricopeptide repeat domain	0.01	6	25.00	536	583
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	1.6E-05	14	21.90	537	584
PPR	PPR repeat	2.8E-06	18	25.00	538	566
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00017	11	27.00	539	605
TPR_7	Tetratricopeptide repeat	0.15	3	27.90	544	561
PPR_3	Pentatricopeptide repeat domain	0.0046	7	25.00	558	602
ATP13	Mitochondrial ATPase expression	0.0028	8	26.70	564	598
PPR_2	PPR repeat family	9.6E-07	19	30.00	570	608
PPR	PPR repeat	3.2E-07	21	25.00	577	602
TPR_7	Tetratricopeptide repeat	0.029	5	27.90	579	596
DUF1922	Domain of unknown function (DUF1922)	0.46	1	20.70	582	601
PPR_long	Pentacotripeptide-repeat region of PRORP	0.024	4	27.00	593	672
TPR_15	Tetratricopeptide repeat	8.7E-05	12	26.20	611	663
PPR	PPR repeat	0.0015	9	25.00	612	634
TPR_7	Tetratricopeptide repeat	0.45	1	27.90	614	633
PPR	PPR repeat	0.0022	9	25.00	650	672
PPR_2	PPR repeat family	0.0046	7	30.00	651	672
PPR_3	Pentatricopeptide repeat domain	0.0088	6	25.00	651	672
PPR_1	PPR repeat	0.055	3	23.80	653	668
FtsK_gamma	Ftsk gamma domain	0.022	5	25.10	658	676