c2pfam

AT5G40280.1 :

Domain Description Evalue Bits GA Start End
SQHop_cyclase_N Squalene-hopene cyclase N-terminal domain 6E-05 12 26.20 89 176
SQHop_cyclase_C Squalene-hopene cyclase C-terminal domain 0.0001 11 26.10 115 200
Prenyltrans Prenyltransferase and squalene oxidase repeat 8.8E-11 31 21.20 134 172
Prenyltrans Prenyltransferase and squalene oxidase repeat 3.1E-08 23 21.20 180 223
SQHop_cyclase_N Squalene-hopene cyclase N-terminal domain 0.13 1 26.20 181 211
SQHop_cyclase_N Squalene-hopene cyclase N-terminal domain 0.021 3 26.20 214 247
Prenyltrans Prenyltransferase and squalene oxidase repeat 3.1E-15 45 21.20 232 270
Prenyltrans Prenyltransferase and squalene oxidase repeat 2.5E-05 13 21.20 294 315
Nop14 Nop14-like family 0.00054 7 34.90 330 368
DNA_pol_phi DNA polymerase phi 0.0054 4 19.50 339 367
RRN3 RNA polymerase I specific transcription initiation factor RRN3 0.00054 8 20.60 339 392
FAM176 FAM176 family 0.00032 10 31.50 340 372
DUF2457 Protein of unknown function (DUF2457) 0.0067 5 30.00 340 367
PBP1_TM Transmembrane domain of transglycosylase PBP1 at N-terminal 0.00036 10 27.80 343 377
Prenyltrans Prenyltransferase and squalene oxidase repeat 4.6E-11 32 21.20 394 432

482

SQHop_cyclase_N
SQHop_cyclase_C
Prenyltrans
Prenyltrans
SQHop_cyclase_N
SQHop_cyclase_N
Prenyltrans
Prenyltrans
Nop14
DNA_pol_phi
RRN3
FAM176
DUF2457
PBP1_TM
Prenyltrans

References:

SQHop_cyclase_C

Prenyltrans
9295270 Structure and function of a squalene cyclase. Science 1997;277:1811-1815.
8016864 A specific amino acid repeat in squalene and oxidosqualene cyclases. Trends Biochem Sci 1994;19:157-158.

FAM176

DNA_pol_phi
12093911 The fifth essential DNA polymerase phi in Saccharomyces cerevisiae is localized to the nucleolus and plays an important role in synthesis of rRNA. Proc Natl Acad Sci U S A 2002;99:9133-9138.

RRN3
8670901 RRN3 gene of Saccharomyces cerevisiae encodes an essential RNA polymerase I transcription factor which interacts with the polymerase independently of DNA template. EMBO J 1996;15:3964-3973.

PBP1_TM

DUF2457

SQHop_cyclase_N

Nop14
11694595 Novel stress-responsive genes EMG1 and NOP14 encode conserved, interacting proteins required for 40S ribosome biogenesis. Mol Biol Cell 2001;12:3644-3657.

Domain	Description	Evalue	Bits	GA	Start	End
SQHop_cyclase_N	Squalene-hopene cyclase N-terminal domain	6E-05	12	26.20	89	176
SQHop_cyclase_C	Squalene-hopene cyclase C-terminal domain	0.0001	11	26.10	115	200
Prenyltrans	Prenyltransferase and squalene oxidase repeat	8.8E-11	31	21.20	134	172
Prenyltrans	Prenyltransferase and squalene oxidase repeat	3.1E-08	23	21.20	180	223
SQHop_cyclase_N	Squalene-hopene cyclase N-terminal domain	0.13	1	26.20	181	211
SQHop_cyclase_N	Squalene-hopene cyclase N-terminal domain	0.021	3	26.20	214	247
Prenyltrans	Prenyltransferase and squalene oxidase repeat	3.1E-15	45	21.20	232	270
Prenyltrans	Prenyltransferase and squalene oxidase repeat	2.5E-05	13	21.20	294	315
Nop14	Nop14-like family	0.00054	7	34.90	330	368
DNA_pol_phi	DNA polymerase phi	0.0054	4	19.50	339	367
RRN3	RNA polymerase I specific transcription initiation factor RRN3	0.00054	8	20.60	339	392
FAM176	FAM176 family	0.00032	10	31.50	340	372
DUF2457	Protein of unknown function (DUF2457)	0.0067	5	30.00	340	367
PBP1_TM	Transmembrane domain of transglycosylase PBP1 at N-terminal	0.00036	10	27.80	343	377
Prenyltrans	Prenyltransferase and squalene oxidase repeat	4.6E-11	32	21.20	394	432