c2pfam

AT5G40410.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.00036 10 25.00 72 96
PPR_2 PPR repeat family 0.032 4 30.00 76 96
PPR_1 PPR repeat 0.016 4 23.80 84 92
PPR_1 PPR repeat 2.4E-05 13 23.80 95 123
PPR_3 Pentatricopeptide repeat domain 4.3E-06 16 25.00 95 145
PPR_2 PPR repeat family 8.1E-11 31 30.00 96 144
PPR_long Pentacotripeptide-repeat region of PRORP 0.0016 7 27.00 97 143
PPR PPR repeat 2.3E-08 23 25.00 98 124
PPR_1 PPR repeat 0.0092 5 23.80 129 143
PPR PPR repeat 0.013 5 25.00 135 162
PPR_2 PPR repeat family 0.00026 10 30.00 171 197
PPR PPR repeat 0.00042 10 25.00 173 195
PPR_1 PPR repeat 0.24 0 23.80 173 194
PPR_2 PPR repeat family 2.4E-08 23 30.00 198 245
PPR_1 PPR repeat 0.35 0 23.80 199 207
PPR_long Pentacotripeptide-repeat region of PRORP 0.2 0 27.00 201 246
PPR PPR repeat 6.5E-06 15 25.00 201 228
PPR_2 PPR repeat family 0.1 2 30.00 272 295
PPR PPR repeat 0.00025 10 25.00 274 296
PPR_3 Pentatricopeptide repeat domain 0.79 -1 25.00 274 296
TPR_14 Tetratricopeptide repeat 0.0037 7 23.50 275 309
PPR_1 PPR repeat 0.33 0 23.80 275 295
PPR_1 PPR repeat 0.36 0 23.80 298 328
PPR_3 Pentatricopeptide repeat domain 4.8E-07 19 25.00 299 346
PPR_2 PPR repeat family 5.7E-13 38 30.00 299 347
PPR PPR repeat 1.5E-06 17 25.00 303 332
PPR_long Pentacotripeptide-repeat region of PRORP 2.4E-05 13 27.00 319 393
PPR_3 Pentatricopeptide repeat domain 1.3E-07 21 25.00 327 383
PPR_1 PPR repeat 1.8E-05 14 23.80 331 362
PPR_2 PPR repeat family 2.8E-05 13 30.00 335 365
PPR PPR repeat 1.1E-06 18 25.00 337 365
PPR PPR repeat 2.1E-06 17 25.00 374 399
PPR_1 PPR repeat 3.6E-05 13 23.80 374 398
PPR_2 PPR repeat family 0.0094 5 30.00 375 398
PPR_3 Pentatricopeptide repeat domain 0.087 2 25.00 441 469
PPR PPR repeat 0.00058 9 25.00 443 469
PPR_2 PPR repeat family 0.021 4 30.00 446 469
DYW_deaminase DYW family of nucleic acid deaminases 0 129 31.60 474 597

608

PPR
PPR_2
PPR_1
PPR_1
PPR_3
PPR_2
PPR_long
PPR
PPR_1
PPR
PPR_2
PPR
PPR_1
PPR_2
PPR_1
PPR_long
PPR
PPR_2
PPR
PPR_3
TPR_14
PPR_1
PPR_1
PPR_3
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR_1
PPR_2
PPR_3
PPR
PPR_2
DYW_deaminase

References:

DYW_deaminase

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.00036	10	25.00	72	96
PPR_2	PPR repeat family	0.032	4	30.00	76	96
PPR_1	PPR repeat	0.016	4	23.80	84	92
PPR_1	PPR repeat	2.4E-05	13	23.80	95	123
PPR_3	Pentatricopeptide repeat domain	4.3E-06	16	25.00	95	145
PPR_2	PPR repeat family	8.1E-11	31	30.00	96	144
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0016	7	27.00	97	143
PPR	PPR repeat	2.3E-08	23	25.00	98	124
PPR_1	PPR repeat	0.0092	5	23.80	129	143
PPR	PPR repeat	0.013	5	25.00	135	162
PPR_2	PPR repeat family	0.00026	10	30.00	171	197
PPR	PPR repeat	0.00042	10	25.00	173	195
PPR_1	PPR repeat	0.24	0	23.80	173	194
PPR_2	PPR repeat family	2.4E-08	23	30.00	198	245
PPR_1	PPR repeat	0.35	0	23.80	199	207
PPR_long	Pentacotripeptide-repeat region of PRORP	0.2	0	27.00	201	246
PPR	PPR repeat	6.5E-06	15	25.00	201	228
PPR_2	PPR repeat family	0.1	2	30.00	272	295
PPR	PPR repeat	0.00025	10	25.00	274	296
PPR_3	Pentatricopeptide repeat domain	0.79	-1	25.00	274	296
TPR_14	Tetratricopeptide repeat	0.0037	7	23.50	275	309
PPR_1	PPR repeat	0.33	0	23.80	275	295
PPR_1	PPR repeat	0.36	0	23.80	298	328
PPR_3	Pentatricopeptide repeat domain	4.8E-07	19	25.00	299	346
PPR_2	PPR repeat family	5.7E-13	38	30.00	299	347
PPR	PPR repeat	1.5E-06	17	25.00	303	332
PPR_long	Pentacotripeptide-repeat region of PRORP	2.4E-05	13	27.00	319	393
PPR_3	Pentatricopeptide repeat domain	1.3E-07	21	25.00	327	383
PPR_1	PPR repeat	1.8E-05	14	23.80	331	362
PPR_2	PPR repeat family	2.8E-05	13	30.00	335	365
PPR	PPR repeat	1.1E-06	18	25.00	337	365
PPR	PPR repeat	2.1E-06	17	25.00	374	399
PPR_1	PPR repeat	3.6E-05	13	23.80	374	398
PPR_2	PPR repeat family	0.0094	5	30.00	375	398
PPR_3	Pentatricopeptide repeat domain	0.087	2	25.00	441	469
PPR	PPR repeat	0.00058	9	25.00	443	469
PPR_2	PPR repeat family	0.021	4	30.00	446	469
DYW_deaminase	DYW family of nucleic acid deaminases	0	129	31.60	474	597