c2pfam

AT1G26310.1 :

Domain Description Evalue Bits GA Start End
SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) 1.2E-27 86 20.40 10 57
Laminin_I Laminin Domain I 0.012 5 30.00 76 145
FapA Flagellar Assembly Protein A 0.00052 9 36.70 84 184
K-box K-box region 2E-33 105 20.60 85 174
ATP-synt_G Mitochondrial ATP synthase g subunit 7.3E-05 14 25.00 89 158
Prominin Prominin 0.0008 8 31.00 94 187
Laminin_I Laminin Domain I 0.00015 12 30.00 98 194
RP-C_C Replication protein C C-terminal region 0.00036 11 20.80 106 199
DUF2115 Uncharacterized protein conserved in archaea (DUF2115) 0.0003 11 25.00 114 192
Bcr-Abl_Oligo Bcr-Abl oncoprotein oligomerisation domain 0.00047 10 20.90 114 152
GPHR_N The Golgi pH Regulator (GPHR) Family N-terminal 0.0023 8 22.10 120 148
DUF3450 Protein of unknown function (DUF3450) 0.00079 9 26.90 123 200
DUF745 Protein of unknown function (DUF745) 0.0018 8 22.40 125 196
DUF1664 Protein of unknown function (DUF1664) 0.00018 12 30.00 127 198
FliD_C Flagellar hook-associated protein 2 C-terminus 0.0034 7 25.40 128 193
DUF4407 Domain of unknown function (DUF4407) 0.00057 9 31.30 132 196
GPHR_N The Golgi pH Regulator (GPHR) Family N-terminal 0.37 1 22.10 154 176
Sec2p GDP/GTP exchange factor Sec2p 1.7E-05 15 22.30 156 199

255

SRF-TF
Laminin_I
FapA
K-box
ATP-synt_G
Prominin
Laminin_I
RP-C_C
DUF2115
Bcr-Abl_Oligo
GPHR_N
DUF3450
DUF745
DUF1664
FliD_C
DUF4407
GPHR_N
Sec2p

References:

Prominin
11467842 Rat prominin, like its mouse and human orthologues, is a pentaspan membrane glycoprotein. Biochem Biophys Res Commun 2001;285:939-944.
10587575 A frameshift mutation in prominin (mouse)-like 1 causes human retinal degeneration. Hum Mol Genet 2000;9:27-34.

DUF2115

FapA

SRF-TF

GPHR_N

DUF4407

DUF3450

Laminin_I
3182802 Laminin, a multidomain protein. The A chain has a unique globular domain and homology with the basement membrane proteoglycan and the laminin B chains. J Biol Chem 1988;263:16536-16544.

Bcr-Abl_Oligo
11780146 Structure of the Bcr-Abl oncoprotein oligomerization domain. Nat Struct Biol. 2002;9:117-120.

Sec2p
9199166 Sec2p mediates nucleotide exchange on Sec4p and is involved in polarized delivery of post-Golgi vesicles. J Cell Biol 1997;137:1495-1509.

DUF1664

RP-C_C

FliD_C
8195064 The Bacillus subtilis sigma D-dependent operon encoding the flagellar proteins FliD, FliS, and FliT. J Bacteriol 1994;176:3093-3101.
9488388 The Pseudomonas aeruginosa flagellar cap protein, FliD, is responsible for mucin adhesion. Infect Immun 1998;66:1000-1007.
11230454 Molecular characterization of fliD gene encoding flagellar cap and its expression among Clostridium difficile isolates from different serogroups. J Clin Microbiol 2001;39:1178-1183.

ATP-synt_G
8011660 Fo membrane domain of ATP synthase from bovine heart mitochondria: purification, subunit composition, and reconstitution with F1-ATPase. Biochemistry 1994;33:7971-7978.

K-box
7958839 Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA. Genes Dev 1994;8:1548-1560.
2031185 Predicting coiled coils from protein sequences. Science 1991;252:1162-1164.

DUF745

Domain	Description	Evalue	Bits	GA	Start	End
SRF-TF	SRF-type transcription factor (DNA-binding and dimerisation domain)	1.2E-27	86	20.40	10	57
Laminin_I	Laminin Domain I	0.012	5	30.00	76	145
FapA	Flagellar Assembly Protein A	0.00052	9	36.70	84	184
K-box	K-box region	2E-33	105	20.60	85	174
ATP-synt_G	Mitochondrial ATP synthase g subunit	7.3E-05	14	25.00	89	158
Prominin	Prominin	0.0008	8	31.00	94	187
Laminin_I	Laminin Domain I	0.00015	12	30.00	98	194
RP-C_C	Replication protein C C-terminal region	0.00036	11	20.80	106	199
DUF2115	Uncharacterized protein conserved in archaea (DUF2115)	0.0003	11	25.00	114	192
Bcr-Abl_Oligo	Bcr-Abl oncoprotein oligomerisation domain	0.00047	10	20.90	114	152
GPHR_N	The Golgi pH Regulator (GPHR) Family N-terminal	0.0023	8	22.10	120	148
DUF3450	Protein of unknown function (DUF3450)	0.00079	9	26.90	123	200
DUF745	Protein of unknown function (DUF745)	0.0018	8	22.40	125	196
DUF1664	Protein of unknown function (DUF1664)	0.00018	12	30.00	127	198
FliD_C	Flagellar hook-associated protein 2 C-terminus	0.0034	7	25.40	128	193
DUF4407	Domain of unknown function (DUF4407)	0.00057	9	31.30	132	196
GPHR_N	The Golgi pH Regulator (GPHR) Family N-terminal	0.37	1	22.10	154	176
Sec2p	GDP/GTP exchange factor Sec2p	1.7E-05	15	22.30	156	199