c2pfam

AT5G41310.1 :

Domain Description Evalue Bits GA Start End
CH Calponin homology (CH) domain 9.4E-10 28 21.30 44 119
TIP120 TATA-binding protein interacting (TIP20) 0.01 4 24.90 184 214
DEAD DEAD/DEAH box helicase 0.92 -2 20.60 188 229
TIP120 TATA-binding protein interacting (TIP20) 0.0055 5 24.90 248 353
DEAD DEAD/DEAH box helicase 0.28 0 20.60 273 303
DUF3456 Protein of unknown function (DUF3456) 4E-07 19 27.30 283 365
Kinesin Kinesin motor domain 0.29 -1 22.50 319 376
Microtub_bd Microtubule binding 0.74 -2 27.00 337 357
Microtub_bd Microtubule binding 0 156 27.00 409 568
Kinesin Kinesin motor domain 0 327 22.50 428 730
DEAD DEAD/DEAH box helicase 0.00036 9 20.60 490 521

961

CH
TIP120
DEAD
TIP120
DEAD
DUF3456
Kinesin
Microtub_bd
Microtub_bd
Kinesin
DEAD

References:

Kinesin
8606780 Crystal-structure of the motor domain af the kinesin-related motor NCD Nature 1996;380:550-555.
9428521 The crystal structure of dimeric kinesin and implications for microtubule-dependent motility. Cell 1997;91:985-994.

TIP120
10567521 TATA-Binding protein-interacting protein 120, TIP120, stimulates three classes of eukaryotic transcription via a unique mechanism. Mol Cell Biol. 1999;19:7951-7960.

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

Microtub_bd

CH
7589522 Does Vav bind to F-actin through a CH domain? FEBS Lett 1995;374:149-151.
9164454 Crystal structure of a calponin homology domain. Nat Struct Biol 1997;4:175-179.
9708889 CH domains revisited. FEBS Lett 1998;431:134-137.
9625744 The single CH domain of calponin is neither sufficient nor necessary for F-actin binding. J Cell Sci 1998;111:1813-1821.

DUF3456

Domain	Description	Evalue	Bits	GA	Start	End
CH	Calponin homology (CH) domain	9.4E-10	28	21.30	44	119
TIP120	TATA-binding protein interacting (TIP20)	0.01	4	24.90	184	214
DEAD	DEAD/DEAH box helicase	0.92	-2	20.60	188	229
TIP120	TATA-binding protein interacting (TIP20)	0.0055	5	24.90	248	353
DEAD	DEAD/DEAH box helicase	0.28	0	20.60	273	303
DUF3456	Protein of unknown function (DUF3456)	4E-07	19	27.30	283	365
Kinesin	Kinesin motor domain	0.29	-1	22.50	319	376
Microtub_bd	Microtubule binding	0.74	-2	27.00	337	357
Microtub_bd	Microtubule binding	0	156	27.00	409	568
Kinesin	Kinesin motor domain	0	327	22.50	428	730
DEAD	DEAD/DEAH box helicase	0.00036	9	20.60	490	521