c2pfam

AT5G41540.1 :

Domain Description Evalue Bits GA Start End
TIR TIR domain 0 176 21.20 10 185
TIR_2 TIR domain 6.7E-14 43 28.00 13 109
Peptidase_S78_2 Putative phage serine protease XkdF 0.00018 12 24.00 87 175
AAA_16 AAA ATPase domain 4.3E-09 27 32.60 184 238
NB-ARC NB-ARC domain 1.8E-26 83 23.50 191 429
ATPase_2 ATPase domain predominantly from Archaea 3.6E-05 14 33.20 200 300
ABC_tran ABC transporter 7.1E-05 14 23.10 205 230
AAA_14 AAA domain 3.7E-05 14 27.00 206 309
AAA_24 AAA domain 3.2E-07 21 27.00 206 304
AAA_22 AAA domain 5.1E-07 20 27.00 207 303
AAA_18 AAA domain 2.4E-06 18 29.40 208 299
NTPase_1 NTPase 0.0008 10 23.90 208 238
RNA_helicase RNA helicase 0.00023 12 21.50 210 234
NACHT NACHT domain 2.6E-06 18 20.40 210 307
AAA ATPase family associated with various cellular activities (AAA) 8.9E-07 20 20.80 210 301
LRR_8 Leucine rich repeat 0.26 2 27.00 543 559
LRR_8 Leucine rich repeat 0.016 5 27.00 604 656
LRR_3 Leucine Rich Repeat 2E-10 31 20.20 605 623
LRR_8 Leucine rich repeat 0.0096 6 27.00 626 684
LRR_4 Leucine Rich repeats (2 copies) 0.00015 13 27.00 626 672
LRR_4 Leucine Rich repeats (2 copies) 0.15 3 27.00 673 715
LRR_8 Leucine rich repeat 0.0004 11 27.00 717 756
LRR_4 Leucine Rich repeats (2 copies) 0.28 2 27.00 718 752
LRR_4 Leucine Rich repeats (2 copies) 0.0015 9 27.00 761 804
LRR_8 Leucine rich repeat 0.0026 8 27.00 761 791

1038

TIR
TIR_2
Peptidase_S78_2
AAA_16
NB-ARC
ATPase_2
ABC_tran
AAA_14
AAA_24
AAA_22
AAA_18
NTPase_1
RNA_helicase
NACHT
AAA
LRR_8
LRR_8
LRR_3
LRR_8
LRR_4
LRR_4
LRR_8
LRR_4
LRR_4
LRR_8

References:

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

LRR_8

NTPase_1

ATPase_2

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

TIR_2

Peptidase_S78_2

AAA_24

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

AAA_22

LRR_4

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
TIR	TIR domain	0	176	21.20	10	185
TIR_2	TIR domain	6.7E-14	43	28.00	13	109
Peptidase_S78_2	Putative phage serine protease XkdF	0.00018	12	24.00	87	175
AAA_16	AAA ATPase domain	4.3E-09	27	32.60	184	238
NB-ARC	NB-ARC domain	1.8E-26	83	23.50	191	429
ATPase_2	ATPase domain predominantly from Archaea	3.6E-05	14	33.20	200	300
ABC_tran	ABC transporter	7.1E-05	14	23.10	205	230
AAA_14	AAA domain	3.7E-05	14	27.00	206	309
AAA_24	AAA domain	3.2E-07	21	27.00	206	304
AAA_22	AAA domain	5.1E-07	20	27.00	207	303
AAA_18	AAA domain	2.4E-06	18	29.40	208	299
NTPase_1	NTPase	0.0008	10	23.90	208	238
RNA_helicase	RNA helicase	0.00023	12	21.50	210	234
NACHT	NACHT domain	2.6E-06	18	20.40	210	307
AAA	ATPase family associated with various cellular activities (AAA)	8.9E-07	20	20.80	210	301
LRR_8	Leucine rich repeat	0.26	2	27.00	543	559
LRR_8	Leucine rich repeat	0.016	5	27.00	604	656
LRR_3	Leucine Rich Repeat	2E-10	31	20.20	605	623
LRR_8	Leucine rich repeat	0.0096	6	27.00	626	684
LRR_4	Leucine Rich repeats (2 copies)	0.00015	13	27.00	626	672
LRR_4	Leucine Rich repeats (2 copies)	0.15	3	27.00	673	715
LRR_8	Leucine rich repeat	0.0004	11	27.00	717	756
LRR_4	Leucine Rich repeats (2 copies)	0.28	2	27.00	718	752
LRR_4	Leucine Rich repeats (2 copies)	0.0015	9	27.00	761	804
LRR_8	Leucine rich repeat	0.0026	8	27.00	761	791