c2pfam

AT5G41770.1 :

Domain Description Evalue Bits GA Start End
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.00092 9 20.90 75 104
Suf Suppressor of forked protein (Suf) 2.2E-06 18 20.40 78 207
TPR_17 Tetratricopeptide repeat 0.72 1 24.40 90 112
HAT HAT (Half-A-TPR) repeat 0.004 7 21.00 91 104
TPR_8 Tetratricopeptide repeat 0.32 2 25.70 93 120
TPR_2 Tetratricopeptide repeat 0.0012 9 22.40 94 120
TPR_14 Tetratricopeptide repeat 0.00019 12 23.50 94 134
TPR_6 Tetratricopeptide repeat 0.023 6 26.30 96 120
TPR_12 Tetratricopeptide repeat 0.002 8 30.10 100 124
Wzy_C_2 Virulence factor membrane-bound polymerase, C-terminal 0.027 4 28.50 103 192
TPR_16 Tetratricopeptide repeat 0.0021 9 32.70 105 135
TPR_19 Tetratricopeptide repeat 0.0095 6 25.00 105 152
HAT HAT (Half-A-TPR) repeat 1.7E-05 15 21.00 108 136
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.017 5 20.90 109 138
TPR_17 Tetratricopeptide repeat 0.28 2 24.40 116 139
TPR_14 Tetratricopeptide repeat 0.0028 9 23.50 128 166
TPR_2 Tetratricopeptide repeat 0.69 1 22.40 132 157
TPR_16 Tetratricopeptide repeat 0.0059 7 32.70 139 186
HAT HAT (Half-A-TPR) repeat 0.051 4 21.00 144 171
TPR_9 Tetratricopeptide repeat 0.059 4 35.00 145 193
TPR_14 Tetratricopeptide repeat 0.0029 9 23.50 161 186
TPR_19 Tetratricopeptide repeat 0.0071 7 25.00 174 225
HAT HAT (Half-A-TPR) repeat 6.5E-05 13 21.00 179 203
TPR_14 Tetratricopeptide repeat 0.038 5 23.50 196 234
TPR_9 Tetratricopeptide repeat 0.64 0 35.00 205 225
TPR_6 Tetratricopeptide repeat 0.11 3 26.30 207 220
HAT HAT (Half-A-TPR) repeat 1.2E-15 47 21.00 208 236
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.048 4 20.90 208 246
Suf Suppressor of forked protein (Suf) 4E-06 17 20.40 209 279
TPR_17 Tetratricopeptide repeat 1 0 24.40 215 230
TPR_6 Tetratricopeptide repeat 0.48 1 26.30 228 255
TPR_19 Tetratricopeptide repeat 0.41 1 25.00 228 262
TPR_14 Tetratricopeptide repeat 0.00015 13 23.50 228 263
TPR_2 Tetratricopeptide repeat 0.12 3 22.40 228 254
HAT HAT (Half-A-TPR) repeat 0.017 5 21.00 241 251
Suf Suppressor of forked protein (Suf) 4.8E-05 13 20.40 274 319
HAT HAT (Half-A-TPR) repeat 0.0069 6 21.00 277 287
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.044 4 20.90 324 354
TPR_17 Tetratricopeptide repeat 0.0015 9 24.40 330 362
TPR_16 Tetratricopeptide repeat 0.15 3 32.70 334 374
TPR_8 Tetratricopeptide repeat 0.39 1 25.70 342 368
TPR_14 Tetratricopeptide repeat 0.00041 11 23.50 343 385
TPR_6 Tetratricopeptide repeat 0.064 4 26.30 355 372
HAT HAT (Half-A-TPR) repeat 0.0097 6 21.00 358 366
Wzy_C_2 Virulence factor membrane-bound polymerase, C-terminal 0.0016 8 28.50 384 497
HAT HAT (Half-A-TPR) repeat 0.037 4 21.00 387 395
TPR_8 Tetratricopeptide repeat 0.17 2 25.70 396 416
HAT HAT (Half-A-TPR) repeat 0.21 2 21.00 400 409
Suf Suppressor of forked protein (Suf) 0.00087 9 20.40 420 488
TPR_14 Tetratricopeptide repeat 0.012 7 23.50 424 456
TPR_6 Tetratricopeptide repeat 0.66 1 26.30 435 455
TPR_19 Tetratricopeptide repeat 1.8E-05 15 25.00 438 499
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.066 3 20.90 453 477
TPR_14 Tetratricopeptide repeat 0.0015 10 23.50 460 484
TPR_12 Tetratricopeptide repeat 0.079 3 30.10 464 486
TPR_16 Tetratricopeptide repeat 0.0056 7 32.70 466 517
TPR_2 Tetratricopeptide repeat 0.0025 8 22.40 467 489
TPR_8 Tetratricopeptide repeat 0.00022 12 25.70 467 489
TPR_6 Tetratricopeptide repeat 0.17 3 26.30 467 483
TPR_9 Tetratricopeptide repeat 0.0021 8 35.00 468 517
HAT HAT (Half-A-TPR) repeat 0.00027 11 21.00 472 500
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.71 0 20.90 476 510
TPR_17 Tetratricopeptide repeat 0.00017 12 24.40 478 510
TPR_14 Tetratricopeptide repeat 0.1 4 23.50 492 519
TPR_8 Tetratricopeptide repeat 0.7 1 25.70 493 518
Suf Suppressor of forked protein (Suf) 1.1E-06 19 20.40 502 552
HAT HAT (Half-A-TPR) repeat 0.12 3 21.00 505 514
U3_assoc_6 U3 small nucleolar RNA-associated protein 6 0.18 2 20.90 510 550
TPR_6 Tetratricopeptide repeat 0.12 3 26.30 513 554
TPR_14 Tetratricopeptide repeat 0.0024 9 23.50 528 557
HAT HAT (Half-A-TPR) repeat 1.7E-05 15 21.00 541 569
Suf Suppressor of forked protein (Suf) 0.014 5 20.40 543 576
RNase_H2_suC Ribonuclease H2 non-catalytic subunit (Ylr154p-like) 0.00017 12 20.80 575 632
HAT HAT (Half-A-TPR) repeat 0.28 1 21.00 597 606
Suf Suppressor of forked protein (Suf) 0.065 3 20.40 598 658

705

U3_assoc_6
Suf
TPR_17
HAT
TPR_8
TPR_2
TPR_14
TPR_6
TPR_12
Wzy_C_2
TPR_16
TPR_19
HAT
U3_assoc_6
TPR_17
TPR_14
TPR_2
TPR_16
HAT
TPR_9
TPR_14
TPR_19
HAT
TPR_14
TPR_9
TPR_6
HAT
U3_assoc_6
Suf
TPR_17
TPR_6
TPR_19
TPR_14
TPR_2
HAT
Suf
HAT
U3_assoc_6
TPR_17
TPR_16
TPR_8
TPR_14
TPR_6
HAT
Wzy_C_2
HAT
TPR_8
HAT
Suf
TPR_14
TPR_6
TPR_19
U3_assoc_6
TPR_14
TPR_12
TPR_16
TPR_2
TPR_8
TPR_6
TPR_9
HAT
U3_assoc_6
TPR_17
TPR_14
TPR_8
Suf
HAT
U3_assoc_6
TPR_6
TPR_14
HAT
Suf
RNase_H2_suC
HAT
Suf

References:

TPR_6

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

RNase_H2_suC
14734815 RNase H2 of Saccharomyces cerevisiae is a complex of three proteins. Nucleic Acids Res. 2004;32:407-414.

Wzy_C_2

TPR_17

TPR_16

TPR_14

TPR_12

U3_assoc_6
12068309 A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis. Nature 2002;0:0-0.

HAT
9478129 The HAT helix, a repetitive motif implicated in RNA processing. Trends Biochem Sci 1998;23:15-16.

TPR_9

Suf
9826695 Autoregulation at the level of mRNA 3' end formation of the suppressor of forked gene of Drosophila melanogaster is conserved in Drosophila virilis. Proc Natl Acad Sci U S A 1998;95:14302-14307.

TPR_19

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.00092	9	20.90	75	104
Suf	Suppressor of forked protein (Suf)	2.2E-06	18	20.40	78	207
TPR_17	Tetratricopeptide repeat	0.72	1	24.40	90	112
HAT	HAT (Half-A-TPR) repeat	0.004	7	21.00	91	104
TPR_8	Tetratricopeptide repeat	0.32	2	25.70	93	120
TPR_2	Tetratricopeptide repeat	0.0012	9	22.40	94	120
TPR_14	Tetratricopeptide repeat	0.00019	12	23.50	94	134
TPR_6	Tetratricopeptide repeat	0.023	6	26.30	96	120
TPR_12	Tetratricopeptide repeat	0.002	8	30.10	100	124
Wzy_C_2	Virulence factor membrane-bound polymerase, C-terminal	0.027	4	28.50	103	192
TPR_16	Tetratricopeptide repeat	0.0021	9	32.70	105	135
TPR_19	Tetratricopeptide repeat	0.0095	6	25.00	105	152
HAT	HAT (Half-A-TPR) repeat	1.7E-05	15	21.00	108	136
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.017	5	20.90	109	138
TPR_17	Tetratricopeptide repeat	0.28	2	24.40	116	139
TPR_14	Tetratricopeptide repeat	0.0028	9	23.50	128	166
TPR_2	Tetratricopeptide repeat	0.69	1	22.40	132	157
TPR_16	Tetratricopeptide repeat	0.0059	7	32.70	139	186
HAT	HAT (Half-A-TPR) repeat	0.051	4	21.00	144	171
TPR_9	Tetratricopeptide repeat	0.059	4	35.00	145	193
TPR_14	Tetratricopeptide repeat	0.0029	9	23.50	161	186
TPR_19	Tetratricopeptide repeat	0.0071	7	25.00	174	225
HAT	HAT (Half-A-TPR) repeat	6.5E-05	13	21.00	179	203
TPR_14	Tetratricopeptide repeat	0.038	5	23.50	196	234
TPR_9	Tetratricopeptide repeat	0.64	0	35.00	205	225
TPR_6	Tetratricopeptide repeat	0.11	3	26.30	207	220
HAT	HAT (Half-A-TPR) repeat	1.2E-15	47	21.00	208	236
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.048	4	20.90	208	246
Suf	Suppressor of forked protein (Suf)	4E-06	17	20.40	209	279
TPR_17	Tetratricopeptide repeat	1	0	24.40	215	230
TPR_6	Tetratricopeptide repeat	0.48	1	26.30	228	255
TPR_19	Tetratricopeptide repeat	0.41	1	25.00	228	262
TPR_14	Tetratricopeptide repeat	0.00015	13	23.50	228	263
TPR_2	Tetratricopeptide repeat	0.12	3	22.40	228	254
HAT	HAT (Half-A-TPR) repeat	0.017	5	21.00	241	251
Suf	Suppressor of forked protein (Suf)	4.8E-05	13	20.40	274	319
HAT	HAT (Half-A-TPR) repeat	0.0069	6	21.00	277	287
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.044	4	20.90	324	354
TPR_17	Tetratricopeptide repeat	0.0015	9	24.40	330	362
TPR_16	Tetratricopeptide repeat	0.15	3	32.70	334	374
TPR_8	Tetratricopeptide repeat	0.39	1	25.70	342	368
TPR_14	Tetratricopeptide repeat	0.00041	11	23.50	343	385
TPR_6	Tetratricopeptide repeat	0.064	4	26.30	355	372
HAT	HAT (Half-A-TPR) repeat	0.0097	6	21.00	358	366
Wzy_C_2	Virulence factor membrane-bound polymerase, C-terminal	0.0016	8	28.50	384	497
HAT	HAT (Half-A-TPR) repeat	0.037	4	21.00	387	395
TPR_8	Tetratricopeptide repeat	0.17	2	25.70	396	416
HAT	HAT (Half-A-TPR) repeat	0.21	2	21.00	400	409
Suf	Suppressor of forked protein (Suf)	0.00087	9	20.40	420	488
TPR_14	Tetratricopeptide repeat	0.012	7	23.50	424	456
TPR_6	Tetratricopeptide repeat	0.66	1	26.30	435	455
TPR_19	Tetratricopeptide repeat	1.8E-05	15	25.00	438	499
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.066	3	20.90	453	477
TPR_14	Tetratricopeptide repeat	0.0015	10	23.50	460	484
TPR_12	Tetratricopeptide repeat	0.079	3	30.10	464	486
TPR_16	Tetratricopeptide repeat	0.0056	7	32.70	466	517
TPR_2	Tetratricopeptide repeat	0.0025	8	22.40	467	489
TPR_8	Tetratricopeptide repeat	0.00022	12	25.70	467	489
TPR_6	Tetratricopeptide repeat	0.17	3	26.30	467	483
TPR_9	Tetratricopeptide repeat	0.0021	8	35.00	468	517
HAT	HAT (Half-A-TPR) repeat	0.00027	11	21.00	472	500
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.71	0	20.90	476	510
TPR_17	Tetratricopeptide repeat	0.00017	12	24.40	478	510
TPR_14	Tetratricopeptide repeat	0.1	4	23.50	492	519
TPR_8	Tetratricopeptide repeat	0.7	1	25.70	493	518
Suf	Suppressor of forked protein (Suf)	1.1E-06	19	20.40	502	552
HAT	HAT (Half-A-TPR) repeat	0.12	3	21.00	505	514
U3_assoc_6	U3 small nucleolar RNA-associated protein 6	0.18	2	20.90	510	550
TPR_6	Tetratricopeptide repeat	0.12	3	26.30	513	554
TPR_14	Tetratricopeptide repeat	0.0024	9	23.50	528	557
HAT	HAT (Half-A-TPR) repeat	1.7E-05	15	21.00	541	569
Suf	Suppressor of forked protein (Suf)	0.014	5	20.40	543	576
RNase_H2_suC	Ribonuclease H2 non-catalytic subunit (Ylr154p-like)	0.00017	12	20.80	575	632
HAT	HAT (Half-A-TPR) repeat	0.28	1	21.00	597	606
Suf	Suppressor of forked protein (Suf)	0.065	3	20.40	598	658