c2pfam

AT5G42200.1 :

Domain Description Evalue Bits GA Start End
Myc_target_1 Myc target protein 1 0.0003 11 31.10 40 61
zf-rbx1 RING-H2 zinc finger domain 1.4E-10 32 31.00 98 146
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 4.6E-07 20 21.40 99 149
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 2.5E-06 18 27.30 101 144
FANCL_C FANCL C-terminal domain 0.00057 11 20.70 101 140
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 7.3E-09 26 27.00 102 148
DUF1272 Protein of unknown function (DUF1272) 2.5E-05 15 23.10 102 151
Prok-RING_1 Prokaryotic RING finger family 1 0.0014 9 29.10 102 133
zf-RING_5 zinc-RING finger domain 1.7E-07 22 27.90 103 146
zf-RING_2 Ring finger domain 6.3E-16 49 27.30 103 146
zf-RING_11 RING-like zinc finger 5.7E-13 39 27.00 103 131
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.1E-11 35 27.00 103 145
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.3E-08 24 21.00 104 145
zf-RING_4 RING/Ubox like zinc-binding domain 2.4E-05 15 27.00 104 148
zf-RING_UBOX RING-type zinc-finger 2.2E-06 18 25.20 104 143
Prok-RING_4 Prokaryotic RING finger family 4 0.00017 12 27.00 104 151
PHD PHD-finger 0.00036 11 27.90 104 146
zinc_ribbon_16 Zinc-ribbon like family 1.9E-06 19 27.00 122 147
zf-C3H2C3 Zinc-finger 0.00042 11 27.00 123 145
Prok-RING_1 Prokaryotic RING finger family 1 0.022 5 29.10 140 152
zf-RING_UBOX RING-type zinc-finger 0.14 3 25.20 142 151
PHD PHD-finger 0.92 0 27.90 142 147
zf-rbx1 RING-H2 zinc finger domain 0.18 3 31.00 144 162

163

Myc_target_1
zf-rbx1
zf-ANAPC11
Zn_ribbon_17
FANCL_C
zf-C3HC4_3
DUF1272
Prok-RING_1
zf-RING_5
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-RING_4
zf-RING_UBOX
Prok-RING_4
PHD
zinc_ribbon_16
zf-C3H2C3
Prok-RING_1
zf-RING_UBOX
PHD
zf-rbx1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Zn_ribbon_17

Prok-RING_4

zinc_ribbon_16

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-ANAPC11

zf-C3H2C3

DUF1272

zf-RING_UBOX

Myc_target_1

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

zf-RING_11

zf-C3HC4_3

zf-C3HC4_2

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
Myc_target_1	Myc target protein 1	0.0003	11	31.10	40	61
zf-rbx1	RING-H2 zinc finger domain	1.4E-10	32	31.00	98	146
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	4.6E-07	20	21.40	99	149
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	2.5E-06	18	27.30	101	144
FANCL_C	FANCL C-terminal domain	0.00057	11	20.70	101	140
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	7.3E-09	26	27.00	102	148
DUF1272	Protein of unknown function (DUF1272)	2.5E-05	15	23.10	102	151
Prok-RING_1	Prokaryotic RING finger family 1	0.0014	9	29.10	102	133
zf-RING_5	zinc-RING finger domain	1.7E-07	22	27.90	103	146
zf-RING_2	Ring finger domain	6.3E-16	49	27.30	103	146
zf-RING_11	RING-like zinc finger	5.7E-13	39	27.00	103	131
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.1E-11	35	27.00	103	145
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	2.3E-08	24	21.00	104	145
zf-RING_4	RING/Ubox like zinc-binding domain	2.4E-05	15	27.00	104	148
zf-RING_UBOX	RING-type zinc-finger	2.2E-06	18	25.20	104	143
Prok-RING_4	Prokaryotic RING finger family 4	0.00017	12	27.00	104	151
PHD	PHD-finger	0.00036	11	27.90	104	146
zinc_ribbon_16	Zinc-ribbon like family	1.9E-06	19	27.00	122	147
zf-C3H2C3	Zinc-finger	0.00042	11	27.00	123	145
Prok-RING_1	Prokaryotic RING finger family 1	0.022	5	29.10	140	152
zf-RING_UBOX	RING-type zinc-finger	0.14	3	25.20	142	151
PHD	PHD-finger	0.92	0	27.90	142	147
zf-rbx1	RING-H2 zinc finger domain	0.18	3	31.00	144	162