c2pfam

AT5G42270.1 :

Domain Description Evalue Bits GA Start End
FtsH_ext FtsH Extracellular 1.8E-05 15 25.50 120 165
FtsH_ext FtsH Extracellular 0.16 3 25.50 199 241
AAA_16 AAA ATPase domain 2.8E-06 18 32.60 282 319
AAA_7 P-loop containing dynein motor region 0.00061 10 25.80 284 303
TIP49 TIP49 C-terminus 3.6E-06 17 23.80 284 319
IstB_IS21 IstB-like ATP binding protein 2.6E-05 14 24.10 284 307
AAA_22 AAA domain 4.2E-05 14 27.00 286 307
RuvB_N Holliday junction DNA helicase ruvB N-terminus 1.8E-05 15 20.00 286 316
Mg_chelatase Magnesium chelatase, subunit ChlI 8.9E-05 12 20.30 286 304
AAA_14 AAA domain 0.00037 11 27.00 286 375
AAA_5 AAA domain (dynein-related subfamily) 1.8E-06 18 20.80 286 400
AAA ATPase family associated with various cellular activities (AAA) 0 151 20.80 287 418
AAA_2 AAA domain (Cdc48 subfamily) 1.1E-05 16 20.60 287 376
AAA_18 AAA domain 0.00047 11 29.40 287 309
AAA_33 AAA domain 7.7E-05 13 27.00 287 308
AAA_28 AAA domain 8.7E-05 13 27.00 288 321
AAA_17 AAA domain 0.00028 12 27.00 289 339
AAA_lid_3 AAA+ lid domain 3.9E-18 55 27.20 441 484
Peptidase_M41 Peptidase family M41 0 242 20.60 500 693

704

FtsH_ext
FtsH_ext
AAA_16
AAA_7
TIP49
IstB_IS21
AAA_22
RuvB_N
Mg_chelatase
AAA_14
AAA_5
AAA
AAA_2
AAA_18
AAA_33
AAA_28
AAA_17
AAA_lid_3
Peptidase_M41

References:

IstB_IS21

AAA_16

AAA_14

AAA_17

AAA_lid_3

FtsH_ext
12667449 Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol Cell 2003;11:659-669.
12732516 The ftsH gene of the wine bacterium Oenococcus oeni is involved in protection against environmental stress. Appl Environ Microbiol 2003;69:2512-2520.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Peptidase_M41

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_33

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
FtsH_ext	FtsH Extracellular	1.8E-05	15	25.50	120	165
FtsH_ext	FtsH Extracellular	0.16	3	25.50	199	241
AAA_16	AAA ATPase domain	2.8E-06	18	32.60	282	319
AAA_7	P-loop containing dynein motor region	0.00061	10	25.80	284	303
TIP49	TIP49 C-terminus	3.6E-06	17	23.80	284	319
IstB_IS21	IstB-like ATP binding protein	2.6E-05	14	24.10	284	307
AAA_22	AAA domain	4.2E-05	14	27.00	286	307
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	1.8E-05	15	20.00	286	316
Mg_chelatase	Magnesium chelatase, subunit ChlI	8.9E-05	12	20.30	286	304
AAA_14	AAA domain	0.00037	11	27.00	286	375
AAA_5	AAA domain (dynein-related subfamily)	1.8E-06	18	20.80	286	400
AAA	ATPase family associated with various cellular activities (AAA)	0	151	20.80	287	418
AAA_2	AAA domain (Cdc48 subfamily)	1.1E-05	16	20.60	287	376
AAA_18	AAA domain	0.00047	11	29.40	287	309
AAA_33	AAA domain	7.7E-05	13	27.00	287	308
AAA_28	AAA domain	8.7E-05	13	27.00	288	321
AAA_17	AAA domain	0.00028	12	27.00	289	339
AAA_lid_3	AAA+ lid domain	3.9E-18	55	27.20	441	484
Peptidase_M41	Peptidase family M41	0	242	20.60	500	693