c2pfam

AT5G42450.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.014 5 25.00 55 101
PPR_2 PPR repeat family 8.1E-08 22 30.00 57 100
PPR PPR repeat 0.015 6 25.00 61 89
PPR_long Pentacotripeptide-repeat region of PRORP 0.023 4 27.00 68 140
PPR_1 PPR repeat 0.0056 6 23.80 88 100
PPR_2 PPR repeat family 0.37 1 30.00 127 153
PPR PPR repeat 0.24 2 25.00 133 153
TPR_19 Tetratricopeptide repeat 0.83 0 25.00 136 153
PPR_long Pentacotripeptide-repeat region of PRORP 0.31 0 27.00 155 221
PPR_3 Pentatricopeptide repeat domain 0.012 6 25.00 157 198
PPR_2 PPR repeat family 9.2E-10 28 30.00 157 190
PPR_1 PPR repeat 0.00046 10 23.80 157 185
PPR PPR repeat 1.2E-07 22 25.00 161 189
TPR_12 Tetratricopeptide repeat 0.28 1 30.10 164 183
TPR_14 Tetratricopeptide repeat 0.36 2 23.50 166 185
TPR_19 Tetratricopeptide repeat 0.65 0 25.00 169 187
TPR_1 Tetratricopeptide repeat 0.065 3 20.40 169 183
TPR_2 Tetratricopeptide repeat 0.067 3 22.40 169 183
PPR_3 Pentatricopeptide repeat domain 0.0013 9 25.00 189 236
PPR_1 PPR repeat 7.2E-06 16 23.80 189 216
PPR_2 PPR repeat family 1.5E-12 37 30.00 189 235
PPR PPR repeat 1.9E-09 27 25.00 191 221
PPR_3 Pentatricopeptide repeat domain 0.019 5 25.00 257 291
PPR_2 PPR repeat family 3E-05 14 30.00 261 289
PPR_1 PPR repeat 0.00034 10 23.80 261 286
PPR PPR repeat 3.4E-07 20 25.00 264 291
TPR_1 Tetratricopeptide repeat 0.053 3 20.40 264 287
PPR_3 Pentatricopeptide repeat domain 0.00031 11 25.00 293 333
PPR_2 PPR repeat family 7.4E-14 42 30.00 293 335
PPR_1 PPR repeat 2.5E-07 20 23.80 294 322
PPR PPR repeat 4.7E-12 35 25.00 296 323
TPR_1 Tetratricopeptide repeat 0.072 3 20.40 298 320
TPR_14 Tetratricopeptide repeat 0.0071 7 23.50 301 334
TPR_10 Tetratricopeptide repeat 0.004 7 27.50 305 322
TPR_2 Tetratricopeptide repeat 0.17 2 22.40 305 322
TPR_12 Tetratricopeptide repeat 0.16 2 30.10 305 320
TPR_19 Tetratricopeptide repeat 0.18 2 25.00 308 338
PPR_long Pentacotripeptide-repeat region of PRORP 0.0083 5 27.00 313 395
PPR PPR repeat 0.94 0 25.00 339 356
TPR_12 Tetratricopeptide repeat 0.0058 7 30.10 340 391
PPR PPR repeat 3.4E-06 17 25.00 372 395
PPR_1 PPR repeat 0.00011 12 23.80 372 395
PPR_2 PPR repeat family 0.0039 7 30.00 372 395
TPR_14 Tetratricopeptide repeat 0.026 5 23.50 372 394
TPR_19 Tetratricopeptide repeat 0.014 6 25.00 375 397
TPR_10 Tetratricopeptide repeat 0.017 5 27.50 378 392
TPR_2 Tetratricopeptide repeat 0.37 1 22.40 379 391
TPR_2 Tetratricopeptide repeat 0.83 0 22.40 420 434
TPR_1 Tetratricopeptide repeat 0.92 -1 20.40 424 434
TPR_19 Tetratricopeptide repeat 0.49 1 25.00 425 451
TPR_17 Tetratricopeptide repeat 0.00051 10 24.40 426 448
PPR_3 Pentatricopeptide repeat domain 0.088 3 25.00 434 467
TPR_10 Tetratricopeptide repeat 0.099 2 27.50 436 452
PPR PPR repeat 0.15 2 25.00 437 465

517

PPR_3
PPR_2
PPR
PPR_long
PPR_1
PPR_2
PPR
TPR_19
PPR_long
PPR_3
PPR_2
PPR_1
PPR
TPR_12
TPR_14
TPR_19
TPR_1
TPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_2
PPR_1
PPR
TPR_1
PPR_3
PPR_2
PPR_1
PPR
TPR_1
TPR_14
TPR_10
TPR_2
TPR_12
TPR_19
PPR_long
PPR
TPR_12
PPR
PPR_1
PPR_2
TPR_14
TPR_19
TPR_10
TPR_2
TPR_2
TPR_1
TPR_19
TPR_17
PPR_3
TPR_10
PPR

References:

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.014	5	25.00	55	101
PPR_2	PPR repeat family	8.1E-08	22	30.00	57	100
PPR	PPR repeat	0.015	6	25.00	61	89
PPR_long	Pentacotripeptide-repeat region of PRORP	0.023	4	27.00	68	140
PPR_1	PPR repeat	0.0056	6	23.80	88	100
PPR_2	PPR repeat family	0.37	1	30.00	127	153
PPR	PPR repeat	0.24	2	25.00	133	153
TPR_19	Tetratricopeptide repeat	0.83	0	25.00	136	153
PPR_long	Pentacotripeptide-repeat region of PRORP	0.31	0	27.00	155	221
PPR_3	Pentatricopeptide repeat domain	0.012	6	25.00	157	198
PPR_2	PPR repeat family	9.2E-10	28	30.00	157	190
PPR_1	PPR repeat	0.00046	10	23.80	157	185
PPR	PPR repeat	1.2E-07	22	25.00	161	189
TPR_12	Tetratricopeptide repeat	0.28	1	30.10	164	183
TPR_14	Tetratricopeptide repeat	0.36	2	23.50	166	185
TPR_19	Tetratricopeptide repeat	0.65	0	25.00	169	187
TPR_1	Tetratricopeptide repeat	0.065	3	20.40	169	183
TPR_2	Tetratricopeptide repeat	0.067	3	22.40	169	183
PPR_3	Pentatricopeptide repeat domain	0.0013	9	25.00	189	236
PPR_1	PPR repeat	7.2E-06	16	23.80	189	216
PPR_2	PPR repeat family	1.5E-12	37	30.00	189	235
PPR	PPR repeat	1.9E-09	27	25.00	191	221
PPR_3	Pentatricopeptide repeat domain	0.019	5	25.00	257	291
PPR_2	PPR repeat family	3E-05	14	30.00	261	289
PPR_1	PPR repeat	0.00034	10	23.80	261	286
PPR	PPR repeat	3.4E-07	20	25.00	264	291
TPR_1	Tetratricopeptide repeat	0.053	3	20.40	264	287
PPR_3	Pentatricopeptide repeat domain	0.00031	11	25.00	293	333
PPR_2	PPR repeat family	7.4E-14	42	30.00	293	335
PPR_1	PPR repeat	2.5E-07	20	23.80	294	322
PPR	PPR repeat	4.7E-12	35	25.00	296	323
TPR_1	Tetratricopeptide repeat	0.072	3	20.40	298	320
TPR_14	Tetratricopeptide repeat	0.0071	7	23.50	301	334
TPR_10	Tetratricopeptide repeat	0.004	7	27.50	305	322
TPR_2	Tetratricopeptide repeat	0.17	2	22.40	305	322
TPR_12	Tetratricopeptide repeat	0.16	2	30.10	305	320
TPR_19	Tetratricopeptide repeat	0.18	2	25.00	308	338
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0083	5	27.00	313	395
PPR	PPR repeat	0.94	0	25.00	339	356
TPR_12	Tetratricopeptide repeat	0.0058	7	30.10	340	391
PPR	PPR repeat	3.4E-06	17	25.00	372	395
PPR_1	PPR repeat	0.00011	12	23.80	372	395
PPR_2	PPR repeat family	0.0039	7	30.00	372	395
TPR_14	Tetratricopeptide repeat	0.026	5	23.50	372	394
TPR_19	Tetratricopeptide repeat	0.014	6	25.00	375	397
TPR_10	Tetratricopeptide repeat	0.017	5	27.50	378	392
TPR_2	Tetratricopeptide repeat	0.37	1	22.40	379	391
TPR_2	Tetratricopeptide repeat	0.83	0	22.40	420	434
TPR_1	Tetratricopeptide repeat	0.92	-1	20.40	424	434
TPR_19	Tetratricopeptide repeat	0.49	1	25.00	425	451
TPR_17	Tetratricopeptide repeat	0.00051	10	24.40	426	448
PPR_3	Pentatricopeptide repeat domain	0.088	3	25.00	434	467
TPR_10	Tetratricopeptide repeat	0.099	2	27.50	436	452
PPR	PPR repeat	0.15	2	25.00	437	465