c2pfam

AT5G43790.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.00089 8 23.80 68 80
PPR_2 PPR repeat family 1.4E-07 21 30.00 69 121
PPR_3 Pentatricopeptide repeat domain 0.017 4 25.00 69 120
PPR_long Pentacotripeptide-repeat region of PRORP 0.051 2 27.00 73 120
PPR PPR repeat 0.18 1 25.00 73 81
PPR_1 PPR repeat 0.26 0 23.80 109 116
TPR_14 Tetratricopeptide repeat 3.7E-05 13 23.50 153 189
PPR_3 Pentatricopeptide repeat domain 0.14 1 25.00 155 178
PPR_2 PPR repeat family 0.058 3 30.00 156 175
PPR PPR repeat 8E-05 12 25.00 156 178
PPR_1 PPR repeat 0.028 3 23.80 161 175
PPR_1 PPR repeat 0.0027 6 23.80 178 193
PPR_3 Pentatricopeptide repeat domain 5E-05 12 25.00 178 227
PPR_long Pentacotripeptide-repeat region of PRORP 2.3E-05 13 27.00 178 231
PPR_2 PPR repeat family 2.2E-06 17 30.00 179 228
PPR PPR repeat 0.0027 7 25.00 183 198
PPR PPR repeat 0.45 0 25.00 221 233
PPR_3 Pentatricopeptide repeat domain 0.0049 6 25.00 248 282
PPR_2 PPR repeat family 1.6E-05 14 30.00 255 283
PPR PPR repeat 4.9E-08 22 25.00 255 281
PPR_1 PPR repeat 0.00088 8 23.80 255 278
PPR_3 Pentatricopeptide repeat domain 0.031 3 25.00 279 327
PPR_1 PPR repeat 0.0037 6 23.80 280 292
PPR_2 PPR repeat family 2.9E-10 29 30.00 281 328
PPR PPR repeat 5.8E-08 22 25.00 284 312
PPR_long Pentacotripeptide-repeat region of PRORP 1.8E-06 16 27.00 299 379
PPR_3 Pentatricopeptide repeat domain 0.00049 9 25.00 310 364
PPR_1 PPR repeat 0.00079 8 23.80 312 344
PPR PPR repeat 2.4E-06 17 25.00 319 344
PPR_2 PPR repeat family 0.00025 10 30.00 324 351
PPR_3 Pentatricopeptide repeat domain 0.015 4 25.00 347 379
PPR_1 PPR repeat 7.4E-07 18 23.80 348 379
PPR_2 PPR repeat family 0.0022 7 30.00 351 380
PPR PPR repeat 3.6E-07 19 25.00 355 380
TPR_14 Tetratricopeptide repeat 0.16 2 23.50 358 378

460

PPR_1
PPR_2
PPR_3
PPR_long
PPR
PPR_1
TPR_14
PPR_3
PPR_2
PPR
PPR_1
PPR_1
PPR_3
PPR_long
PPR_2
PPR
PPR
PPR_3
PPR_2
PPR
PPR_1
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_14

References:

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.00089	8	23.80	68	80
PPR_2	PPR repeat family	1.4E-07	21	30.00	69	121
PPR_3	Pentatricopeptide repeat domain	0.017	4	25.00	69	120
PPR_long	Pentacotripeptide-repeat region of PRORP	0.051	2	27.00	73	120
PPR	PPR repeat	0.18	1	25.00	73	81
PPR_1	PPR repeat	0.26	0	23.80	109	116
TPR_14	Tetratricopeptide repeat	3.7E-05	13	23.50	153	189
PPR_3	Pentatricopeptide repeat domain	0.14	1	25.00	155	178
PPR_2	PPR repeat family	0.058	3	30.00	156	175
PPR	PPR repeat	8E-05	12	25.00	156	178
PPR_1	PPR repeat	0.028	3	23.80	161	175
PPR_1	PPR repeat	0.0027	6	23.80	178	193
PPR_3	Pentatricopeptide repeat domain	5E-05	12	25.00	178	227
PPR_long	Pentacotripeptide-repeat region of PRORP	2.3E-05	13	27.00	178	231
PPR_2	PPR repeat family	2.2E-06	17	30.00	179	228
PPR	PPR repeat	0.0027	7	25.00	183	198
PPR	PPR repeat	0.45	0	25.00	221	233
PPR_3	Pentatricopeptide repeat domain	0.0049	6	25.00	248	282
PPR_2	PPR repeat family	1.6E-05	14	30.00	255	283
PPR	PPR repeat	4.9E-08	22	25.00	255	281
PPR_1	PPR repeat	0.00088	8	23.80	255	278
PPR_3	Pentatricopeptide repeat domain	0.031	3	25.00	279	327
PPR_1	PPR repeat	0.0037	6	23.80	280	292
PPR_2	PPR repeat family	2.9E-10	29	30.00	281	328
PPR	PPR repeat	5.8E-08	22	25.00	284	312
PPR_long	Pentacotripeptide-repeat region of PRORP	1.8E-06	16	27.00	299	379
PPR_3	Pentatricopeptide repeat domain	0.00049	9	25.00	310	364
PPR_1	PPR repeat	0.00079	8	23.80	312	344
PPR	PPR repeat	2.4E-06	17	25.00	319	344
PPR_2	PPR repeat family	0.00025	10	30.00	324	351
PPR_3	Pentatricopeptide repeat domain	0.015	4	25.00	347	379
PPR_1	PPR repeat	7.4E-07	18	23.80	348	379
PPR_2	PPR repeat family	0.0022	7	30.00	351	380
PPR	PPR repeat	3.6E-07	19	25.00	355	380
TPR_14	Tetratricopeptide repeat	0.16	2	23.50	358	378