c2pfam

AT5G44110.1 :

Domain Description Evalue Bits GA Start End
ABC_tran ABC transporter 7.6E-17 53 23.10 31 175
DLIC Dynein light intermediate chain (DLIC) 0.00016 11 19.30 35 61
AAA_25 AAA domain 1.3E-05 15 27.00 36 60
AAA_29 P-loop containing region of AAA domain 4.7E-06 17 27.00 38 56
AAA_16 AAA ATPase domain 0.0002 12 32.60 40 59
AAA_24 AAA domain 0.00023 12 27.00 40 61
Arf ADP-ribosylation factor family 0.00024 11 20.30 40 64
NACHT NACHT domain 4.5E-05 14 20.40 41 62
PduV-EutP Ethanolamine utilisation - propanediol utilisation 4.7E-05 14 20.50 41 65
AAA_30 AAA domain 0.00013 12 27.00 42 71
AAA_28 AAA domain 2.9E-05 15 27.00 42 67
AAA_22 AAA domain 0.00081 10 27.00 42 63
SRP54 SRP54-type protein, GTPase domain 5.2E-05 14 20.50 42 71
AAA_14 AAA domain 0.00039 11 27.00 43 72
cobW CobW/HypB/UreG, nucleotide-binding domain 0.00035 11 20.70 43 63
AAA_18 AAA domain 5.1E-05 15 29.40 43 76
Zeta_toxin Zeta toxin 3.8E-05 14 20.10 43 73
AAA_5 AAA domain (dynein-related subfamily) 0.00035 11 20.80 43 84
AAA ATPase family associated with various cellular activities (AAA) 0.00016 13 20.80 43 63
AAA_33 AAA domain 0.00012 13 27.00 43 63
AAA_15 AAA ATPase domain 2.6E-05 15 32.10 43 59
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 2.7E-07 21 27.00 43 60
AAA_23 AAA domain 3.3E-05 15 27.00 43 58
SMC_N RecF/RecN/SMC N terminal domain 0.0013 9 40.00 43 57
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 8.5E-08 23 27.00 142 206
AAA_22 AAA domain 1 0 27.00 161 196
SMC_N RecF/RecN/SMC N terminal domain 0.022 5 40.00 164 196

282

ABC_tran
DLIC
AAA_25
AAA_29
AAA_16
AAA_24
Arf
NACHT
PduV-EutP
AAA_30
AAA_28
AAA_22
SRP54
AAA_14
cobW
AAA_18
Zeta_toxin
AAA_5
AAA
AAA_33
AAA_15
AAA_21
AAA_23
SMC_N
AAA_21
AAA_22
SMC_N

References:

DLIC
10545494 Direct interaction of pericentrin with cytoplasmic dynein light intermediate chain contributes to mitotic spindle organization. J Cell Biol 1999;147:481-492.
10893222 Light intermediate chain 1 defines a functional subfraction of cytoplasmic dynein which binds to pericentrin. J Biol Chem 2000;275:32763-32768.
11907264 Identification of a novel light intermediate chain (D2LIC) for mammalian cytoplasmic dynein 2. Mol Biol Cell 2002;13:817-829.

AAA_15

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

AAA_16

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

AAA_33

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

AAA_29

AAA_28

AAA_18

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

Domain	Description	Evalue	Bits	GA	Start	End
ABC_tran	ABC transporter	7.6E-17	53	23.10	31	175
DLIC	Dynein light intermediate chain (DLIC)	0.00016	11	19.30	35	61
AAA_25	AAA domain	1.3E-05	15	27.00	36	60
AAA_29	P-loop containing region of AAA domain	4.7E-06	17	27.00	38	56
AAA_16	AAA ATPase domain	0.0002	12	32.60	40	59
AAA_24	AAA domain	0.00023	12	27.00	40	61
Arf	ADP-ribosylation factor family	0.00024	11	20.30	40	64
NACHT	NACHT domain	4.5E-05	14	20.40	41	62
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	4.7E-05	14	20.50	41	65
AAA_30	AAA domain	0.00013	12	27.00	42	71
AAA_28	AAA domain	2.9E-05	15	27.00	42	67
AAA_22	AAA domain	0.00081	10	27.00	42	63
SRP54	SRP54-type protein, GTPase domain	5.2E-05	14	20.50	42	71
AAA_14	AAA domain	0.00039	11	27.00	43	72
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.00035	11	20.70	43	63
AAA_18	AAA domain	5.1E-05	15	29.40	43	76
Zeta_toxin	Zeta toxin	3.8E-05	14	20.10	43	73
AAA_5	AAA domain (dynein-related subfamily)	0.00035	11	20.80	43	84
AAA	ATPase family associated with various cellular activities (AAA)	0.00016	13	20.80	43	63
AAA_33	AAA domain	0.00012	13	27.00	43	63
AAA_15	AAA ATPase domain	2.6E-05	15	32.10	43	59
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	2.7E-07	21	27.00	43	60
AAA_23	AAA domain	3.3E-05	15	27.00	43	58
SMC_N	RecF/RecN/SMC N terminal domain	0.0013	9	40.00	43	57
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	8.5E-08	23	27.00	142	206
AAA_22	AAA domain	1	0	27.00	161	196
SMC_N	RecF/RecN/SMC N terminal domain	0.022	5	40.00	164	196