c2pfam

AT5G44230.1 :

Domain Description Evalue Bits GA Start End
PPR_1 PPR repeat 0.00049 10 23.80 113 141
PPR_2 PPR repeat family 6.2E-11 32 30.00 114 159
PPR PPR repeat 1E-08 25 25.00 116 144
TPR_14 Tetratricopeptide repeat 0.037 5 23.50 116 137
PPR_long Pentacotripeptide-repeat region of PRORP 0.00052 9 27.00 117 167
PPR_3 Pentatricopeptide repeat domain 3E-08 23 25.00 117 161
TPR_1 Tetratricopeptide repeat 0.033 4 20.40 124 137
TPR_7 Tetratricopeptide repeat 0.56 0 27.90 128 137
PPR PPR repeat 0.73 0 25.00 150 164
PPR PPR repeat 2.3E-07 21 25.00 188 214
PPR_2 PPR repeat family 1.1E-06 19 30.00 188 215
PPR_3 Pentatricopeptide repeat domain 0.6 0 25.00 188 212
PPR_1 PPR repeat 1.9E-05 14 23.80 188 210
PPR_long Pentacotripeptide-repeat region of PRORP 0.72 -1 27.00 193 241
CARD Caspase recruitment domain 0.00033 10 23.60 198 253
PPR_1 PPR repeat 6.5E-05 12 23.80 213 239
PPR_3 Pentatricopeptide repeat domain 0.00012 12 25.00 213 240
PPR_2 PPR repeat family 0.00011 12 30.00 213 240
PPR PPR repeat 8.2E-06 16 25.00 216 242
TPR_14 Tetratricopeptide repeat 0.011 7 23.50 218 252
TPR_7 Tetratricopeptide repeat 0.19 2 27.90 224 240
PPR_2 PPR repeat family 7.2E-11 32 30.00 244 292
PPR_3 Pentatricopeptide repeat domain 3.6E-05 14 25.00 245 278
PPR_1 PPR repeat 0.00081 9 23.80 245 273
PPR PPR repeat 7.4E-10 28 25.00 247 277
TPR_14 Tetratricopeptide repeat 0.021 6 23.50 248 273
PPR_long Pentacotripeptide-repeat region of PRORP 3.8E-05 13 27.00 258 349
TPR_1 Tetratricopeptide repeat 0.077 3 20.40 261 271
PPR_3 Pentatricopeptide repeat domain 0.013 5 25.00 270 314
PPR_2 PPR repeat family 2.4E-07 21 30.00 318 349
PPR PPR repeat 1E-07 22 25.00 322 348
PPR_3 Pentatricopeptide repeat domain 0.016 5 25.00 323 348
PPR_1 PPR repeat 3.4E-05 13 23.80 323 344
TPR_7 Tetratricopeptide repeat 0.074 3 27.90 326 341
TPR_1 Tetratricopeptide repeat 0.72 0 20.40 327 338
PPR_2 PPR repeat family 1.5E-11 34 30.00 347 390
PPR_1 PPR repeat 2E-07 20 23.80 348 376
PPR_3 Pentatricopeptide repeat domain 4E-05 13 25.00 348 389
PPR PPR repeat 4.6E-07 20 25.00 350 376
PPR_long Pentacotripeptide-repeat region of PRORP 4.5E-06 16 27.00 362 449
TPR_3 Tetratricopeptide repeat 0.0047 7 20.70 363 375
PPR_3 Pentatricopeptide repeat domain 0.00016 11 25.00 378 432
PPR_1 PPR repeat 0.029 4 23.80 381 411
PPR_2 PPR repeat family 0.00036 10 30.00 383 429
PPR PPR repeat 0.0055 7 25.00 387 411
PPR_3 Pentatricopeptide repeat domain 0.12 2 25.00 408 432
PPR_1 PPR repeat 1.2E-06 18 23.80 416 447
PPR PPR repeat 1.3E-06 18 25.00 423 447
PPR_2 PPR repeat family 0.00099 9 30.00 424 447
TPR_7 Tetratricopeptide repeat 0.99 -1 27.90 430 445
PPR_3 Pentatricopeptide repeat domain 0.015 5 25.00 482 519
PPR PPR repeat 0.012 6 25.00 493 518
DYW_deaminase DYW family of nucleic acid deaminases 2.2E-38 121 31.60 525 647

657

PPR_1
PPR_2
PPR
TPR_14
PPR_long
PPR_3
TPR_1
TPR_7
PPR
PPR
PPR_2
PPR_3
PPR_1
PPR_long
CARD
PPR_1
PPR_3
PPR_2
PPR
TPR_14
TPR_7
PPR_2
PPR_3
PPR_1
PPR
TPR_14
PPR_long
TPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
TPR_7
TPR_1
PPR_2
PPR_1
PPR_3
PPR
PPR_long
TPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
PPR_2
TPR_7
PPR_3
PPR
DYW_deaminase

References:

TPR_7

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

DYW_deaminase

CARD
9175472 The CARD domain: a new apoptotic signalling motif. Trends Biochem Sci 1997;22:155-156.
9015748 The interleukin-1 beta converting enzyme family of cysteine proteases. J Cell Biochem 1997;64:2-10.

TPR_3
12799000 Tetratricopeptide-like repeats in type-III-secretion chaperones and regulators. FEMS Microbiol Lett 2003;223:53-60.

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_1	PPR repeat	0.00049	10	23.80	113	141
PPR_2	PPR repeat family	6.2E-11	32	30.00	114	159
PPR	PPR repeat	1E-08	25	25.00	116	144
TPR_14	Tetratricopeptide repeat	0.037	5	23.50	116	137
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00052	9	27.00	117	167
PPR_3	Pentatricopeptide repeat domain	3E-08	23	25.00	117	161
TPR_1	Tetratricopeptide repeat	0.033	4	20.40	124	137
TPR_7	Tetratricopeptide repeat	0.56	0	27.90	128	137
PPR	PPR repeat	0.73	0	25.00	150	164
PPR	PPR repeat	2.3E-07	21	25.00	188	214
PPR_2	PPR repeat family	1.1E-06	19	30.00	188	215
PPR_3	Pentatricopeptide repeat domain	0.6	0	25.00	188	212
PPR_1	PPR repeat	1.9E-05	14	23.80	188	210
PPR_long	Pentacotripeptide-repeat region of PRORP	0.72	-1	27.00	193	241
CARD	Caspase recruitment domain	0.00033	10	23.60	198	253
PPR_1	PPR repeat	6.5E-05	12	23.80	213	239
PPR_3	Pentatricopeptide repeat domain	0.00012	12	25.00	213	240
PPR_2	PPR repeat family	0.00011	12	30.00	213	240
PPR	PPR repeat	8.2E-06	16	25.00	216	242
TPR_14	Tetratricopeptide repeat	0.011	7	23.50	218	252
TPR_7	Tetratricopeptide repeat	0.19	2	27.90	224	240
PPR_2	PPR repeat family	7.2E-11	32	30.00	244	292
PPR_3	Pentatricopeptide repeat domain	3.6E-05	14	25.00	245	278
PPR_1	PPR repeat	0.00081	9	23.80	245	273
PPR	PPR repeat	7.4E-10	28	25.00	247	277
TPR_14	Tetratricopeptide repeat	0.021	6	23.50	248	273
PPR_long	Pentacotripeptide-repeat region of PRORP	3.8E-05	13	27.00	258	349
TPR_1	Tetratricopeptide repeat	0.077	3	20.40	261	271
PPR_3	Pentatricopeptide repeat domain	0.013	5	25.00	270	314
PPR_2	PPR repeat family	2.4E-07	21	30.00	318	349
PPR	PPR repeat	1E-07	22	25.00	322	348
PPR_3	Pentatricopeptide repeat domain	0.016	5	25.00	323	348
PPR_1	PPR repeat	3.4E-05	13	23.80	323	344
TPR_7	Tetratricopeptide repeat	0.074	3	27.90	326	341
TPR_1	Tetratricopeptide repeat	0.72	0	20.40	327	338
PPR_2	PPR repeat family	1.5E-11	34	30.00	347	390
PPR_1	PPR repeat	2E-07	20	23.80	348	376
PPR_3	Pentatricopeptide repeat domain	4E-05	13	25.00	348	389
PPR	PPR repeat	4.6E-07	20	25.00	350	376
PPR_long	Pentacotripeptide-repeat region of PRORP	4.5E-06	16	27.00	362	449
TPR_3	Tetratricopeptide repeat	0.0047	7	20.70	363	375
PPR_3	Pentatricopeptide repeat domain	0.00016	11	25.00	378	432
PPR_1	PPR repeat	0.029	4	23.80	381	411
PPR_2	PPR repeat family	0.00036	10	30.00	383	429
PPR	PPR repeat	0.0055	7	25.00	387	411
PPR_3	Pentatricopeptide repeat domain	0.12	2	25.00	408	432
PPR_1	PPR repeat	1.2E-06	18	23.80	416	447
PPR	PPR repeat	1.3E-06	18	25.00	423	447
PPR_2	PPR repeat family	0.00099	9	30.00	424	447
TPR_7	Tetratricopeptide repeat	0.99	-1	27.90	430	445
PPR_3	Pentatricopeptide repeat domain	0.015	5	25.00	482	519
PPR	PPR repeat	0.012	6	25.00	493	518
DYW_deaminase	DYW family of nucleic acid deaminases	2.2E-38	121	31.60	525	647