c2pfam

AT5G45150.1 :

Domain Description Evalue Bits GA Start End
Ribonucleas_3_3 Ribonuclease-III-like 2.3E-12 37 35.00 18 145
Ribonuclease_3 RNase3 domain 1.8E-22 69 21.50 33 140
BTB BTB/POZ domain 0.00015 12 20.50 204 278
DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1 6.2E-21 64 25.70 309 381
dsrm Double-stranded RNA binding motif 3.9E-12 36 21.00 311 380
Dicer_dimer Dicer dimerisation domain 0.00011 12 22.60 322 380
S_2TMBeta SMODS-associating 2TM, beta-strand rich effector domain 0.00059 9 31.20 345 370
SAM_KSR1 SAM like domain present in kinase suppressor RAS 1 0.0013 8 27.00 370 407
Ribonucleas_3_3 Ribonuclease-III-like 1.4E-05 15 35.00 429 552
Ribonuclease_3 RNase3 domain 7.1E-13 39 21.50 447 549
DDE_Tnp_IS240 DDE domain 0.00014 12 27.00 575 655
dsrm Double-stranded RNA binding motif 2.5E-10 31 21.00 585 643
RVT_2 Reverse transcriptase (RNA-dependent DNA polymerase) 0.00011 11 22.00 599 641
DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1 0.22 1 25.70 622 644
DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1 8.8E-20 60 25.70 839 911
dsrm Double-stranded RNA binding motif 2.8E-12 37 21.00 839 910
Dicer_dimer Dicer dimerisation domain 0.002 8 22.60 853 910
S_2TMBeta SMODS-associating 2TM, beta-strand rich effector domain 0.0036 6 31.20 873 901
SAM_KSR1 SAM like domain present in kinase suppressor RAS 1 0.033 4 27.00 903 940

957

Ribonucleas_3_3
Ribonuclease_3
BTB
DND1_DSRM
dsrm
Dicer_dimer
S_2TMBeta
SAM_KSR1
Ribonucleas_3_3
Ribonuclease_3
DDE_Tnp_IS240
dsrm
RVT_2
DND1_DSRM
DND1_DSRM
dsrm
Dicer_dimer
S_2TMBeta
SAM_KSR1

References:

Ribonucleas_3_3

DDE_Tnp_IS240

dsrm
8036511 Conserved structures and diversity of functions of RNA-binding proteins. Science 1994;265:615-621.

BTB
7938017 The BTB domain, found primarily in zinc finger proteins, defines an evolutionarily conserved family that includes several developmentally regulated genes in Drosophila. Proc Natl Acad Sci U S A 1994;91:10717-10721.
7958847 The POZ domain: a conserved protein-protein interaction motif. Genes Dev 1994;8:1664-1677.
9770450 Crystal structure of the BTB domain from PLZF. Proc Natl Acad Sci U S A 1998;95:12123-12128.
9019154 The LAZ3/BCL6 oncogene encodes a sequence-specific transcriptional inhibitor: a novel function for the BTB/POZ domain as an autonomous repressing domain. Cell Growth Differ 1995;6:1495-1503.
9824158 The BCL-6 POZ domain and other POZ domains interact with the co-repressors N-CoR and SMRT. Oncogene 1998;17:2473-2484.
9765306 Components of the SMRT corepressor complex exhibit distinctive interactions with the POZ domain oncoproteins PLZF, PLZF-RARalpha, and BCL-6. J Biol Chem 1998;273:27695-27702.
16207353 Sequence and structural analysis of BTB domain proteins. Genome Biol. 2005;6:R82.

SAM_KSR1

Dicer_dimer

RVT_2
1698615 Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J 1990;9:3353-3362.

DND1_DSRM

Ribonuclease_3

S_2TMBeta

Domain	Description	Evalue	Bits	GA	Start	End
Ribonucleas_3_3	Ribonuclease-III-like	2.3E-12	37	35.00	18	145
Ribonuclease_3	RNase3 domain	1.8E-22	69	21.50	33	140
BTB	BTB/POZ domain	0.00015	12	20.50	204	278
DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	6.2E-21	64	25.70	309	381
dsrm	Double-stranded RNA binding motif	3.9E-12	36	21.00	311	380
Dicer_dimer	Dicer dimerisation domain	0.00011	12	22.60	322	380
S_2TMBeta	SMODS-associating 2TM, beta-strand rich effector domain	0.00059	9	31.20	345	370
SAM_KSR1	SAM like domain present in kinase suppressor RAS 1	0.0013	8	27.00	370	407
Ribonucleas_3_3	Ribonuclease-III-like	1.4E-05	15	35.00	429	552
Ribonuclease_3	RNase3 domain	7.1E-13	39	21.50	447	549
DDE_Tnp_IS240	DDE domain	0.00014	12	27.00	575	655
dsrm	Double-stranded RNA binding motif	2.5E-10	31	21.00	585	643
RVT_2	Reverse transcriptase (RNA-dependent DNA polymerase)	0.00011	11	22.00	599	641
DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	0.22	1	25.70	622	644
DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	8.8E-20	60	25.70	839	911
dsrm	Double-stranded RNA binding motif	2.8E-12	37	21.00	839	910
Dicer_dimer	Dicer dimerisation domain	0.002	8	22.60	853	910
S_2TMBeta	SMODS-associating 2TM, beta-strand rich effector domain	0.0036	6	31.20	873	901
SAM_KSR1	SAM like domain present in kinase suppressor RAS 1	0.033	4	27.00	903	940