c2pfam

AT5G45200.1 :

Domain Description Evalue Bits GA Start End
TIR TIR domain 6.8E-36 114 21.20 19 179
TIR_2 TIR domain 7.4E-14 43 28.00 21 113
B12-binding B12 binding domain 7.3E-05 13 28.00 38 106
MMR_HSR1 GTPase of unknown function 0.57 1 24.50 57 85
DUF87 Domain of unknown function DUF87 0.52 1 20.90 144 232
AAA_16 AAA ATPase domain 1.6E-06 19 32.60 219 264
NB-ARC NB-ARC domain 8.5E-23 71 23.50 219 448
ATPase_2 ATPase domain predominantly from Archaea 0.00015 12 33.20 221 287
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.00041 10 23.10 227 259
DUF87 Domain of unknown function DUF87 0.0011 9 20.90 233 260
AAA_22 AAA domain 1.3E-05 16 27.00 238 329
AAA_14 AAA domain 3.9E-05 14 27.00 239 364
MMR_HSR1 GTPase of unknown function 0.00081 10 24.50 240 260
AAA_18 AAA domain 4.9E-05 14 29.40 240 265
NACHT NACHT domain 0.00021 12 20.40 240 263
AAA_24 AAA domain 0.00039 11 27.00 240 265
AAA_33 AAA domain 3E-05 15 27.00 242 262
AAA ATPase family associated with various cellular activities (AAA) 1.2E-05 16 20.80 242 267
LRR_8 Leucine rich repeat 0.23 2 27.00 574 593
LRR_3 Leucine Rich Repeat 6.9E-09 26 20.20 640 659
LRR_8 Leucine rich repeat 0.00058 10 27.00 659 695
LRR_8 Leucine rich repeat 0.00051 10 27.00 662 719
LRR_4 Leucine Rich repeats (2 copies) 0.0014 10 27.00 663 701
LRR_8 Leucine rich repeat 0.0049 7 27.00 686 734
LRR_4 Leucine Rich repeats (2 copies) 0.03 5 27.00 713 744
LRR_4 Leucine Rich repeats (2 copies) 0.00014 13 27.00 752 792
LRR_8 Leucine rich repeat 3.8E-06 17 27.00 753 809
LRR_4 Leucine Rich repeats (2 copies) 0.019 6 27.00 802 840
LRR_8 Leucine rich repeat 0.035 4 27.00 819 845
LRR_8 Leucine rich repeat 7.3E-07 19 27.00 868 905
LRR_4 Leucine Rich repeats (2 copies) 1 0 27.00 869 884
LRR_4 Leucine Rich repeats (2 copies) 1 1 27.00 899 933

1261

TIR
TIR_2
B12-binding
MMR_HSR1
DUF87
AAA_16
NB-ARC
ATPase_2
MeaB
DUF87
AAA_22
AAA_14
MMR_HSR1
AAA_18
NACHT
AAA_24
AAA_33
AAA
LRR_8
LRR_3
LRR_8
LRR_8
LRR_4
LRR_8
LRR_4
LRR_4
LRR_8
LRR_4
LRR_8
LRR_8
LRR_4
LRR_4

References:

AAA_16

AAA_14

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

AAA_33

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

LRR_3
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

AAA_24

LRR_8

MeaB

LRR_4

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

ATPase_2

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

TIR_2

DUF87

B12-binding
9739092 How a protein prepares for B12 binding: structure and dynamics of the B12-binding subunit of glutamate mutase from Clostridium tetanomorphum. Structure 1998;6:1021-1033.

TIR
9013863 The cloning and characterization of human MyD88: a member of an IL-1 receptor related family. FEBS Lett 1997;402:81-84.
9237759 A human homologue of the Drosophila Toll protein signals activation of adaptive immunity [see comments] Nature 1997;388:394-397.
12186654 Toll-like receptors: a family of pattern-recognition receptors in mammals. Genome Biol 2002;3:REVIEWS3011.

AAA_22

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
TIR	TIR domain	6.8E-36	114	21.20	19	179
TIR_2	TIR domain	7.4E-14	43	28.00	21	113
B12-binding	B12 binding domain	7.3E-05	13	28.00	38	106
MMR_HSR1	GTPase of unknown function	0.57	1	24.50	57	85
DUF87	Domain of unknown function DUF87	0.52	1	20.90	144	232
AAA_16	AAA ATPase domain	1.6E-06	19	32.60	219	264
NB-ARC	NB-ARC domain	8.5E-23	71	23.50	219	448
ATPase_2	ATPase domain predominantly from Archaea	0.00015	12	33.20	221	287
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.00041	10	23.10	227	259
DUF87	Domain of unknown function DUF87	0.0011	9	20.90	233	260
AAA_22	AAA domain	1.3E-05	16	27.00	238	329
AAA_14	AAA domain	3.9E-05	14	27.00	239	364
MMR_HSR1	GTPase of unknown function	0.00081	10	24.50	240	260
AAA_18	AAA domain	4.9E-05	14	29.40	240	265
NACHT	NACHT domain	0.00021	12	20.40	240	263
AAA_24	AAA domain	0.00039	11	27.00	240	265
AAA_33	AAA domain	3E-05	15	27.00	242	262
AAA	ATPase family associated with various cellular activities (AAA)	1.2E-05	16	20.80	242	267
LRR_8	Leucine rich repeat	0.23	2	27.00	574	593
LRR_3	Leucine Rich Repeat	6.9E-09	26	20.20	640	659
LRR_8	Leucine rich repeat	0.00058	10	27.00	659	695
LRR_8	Leucine rich repeat	0.00051	10	27.00	662	719
LRR_4	Leucine Rich repeats (2 copies)	0.0014	10	27.00	663	701
LRR_8	Leucine rich repeat	0.0049	7	27.00	686	734
LRR_4	Leucine Rich repeats (2 copies)	0.03	5	27.00	713	744
LRR_4	Leucine Rich repeats (2 copies)	0.00014	13	27.00	752	792
LRR_8	Leucine rich repeat	3.8E-06	17	27.00	753	809
LRR_4	Leucine Rich repeats (2 copies)	0.019	6	27.00	802	840
LRR_8	Leucine rich repeat	0.035	4	27.00	819	845
LRR_8	Leucine rich repeat	7.3E-07	19	27.00	868	905
LRR_4	Leucine Rich repeats (2 copies)	1	0	27.00	869	884
LRR_4	Leucine Rich repeats (2 copies)	1	1	27.00	899	933