c2pfam

AT5G45720.1 :

Domain Description Evalue Bits GA Start End
RuvB_N Holliday junction DNA helicase ruvB N-terminus 9.5E-06 16 20.00 351 411
Sigma54_activ_2 Sigma-54 interaction domain 3.9E-05 14 25.00 358 496
DNA_pol3_delta2 DNA polymerase III, delta subunit 4.2E-26 82 27.00 360 514
AAA_16 AAA ATPase domain 1.7E-05 16 32.60 364 408
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00028 11 26.60 365 405
AAA_11 AAA domain 0.0017 8 27.00 366 408
ABC_tran ABC transporter 0.00083 10 23.10 377 403
AAA_30 AAA domain 0.00037 11 27.00 378 489
AAA_22 AAA domain 3E-08 24 27.00 378 489
AAA_23 AAA domain 0.00016 13 27.00 379 422
NACHT NACHT domain 3.5E-07 21 20.40 380 492
RNA_helicase RNA helicase 3.4E-05 15 21.50 381 475
AAA ATPase family associated with various cellular activities (AAA) 7.1E-11 33 20.80 381 511
AAA_5 AAA domain (dynein-related subfamily) 0.00012 12 20.80 383 482
Cytidylate_kin Cytidylate kinase 0.0048 7 20.40 383 405
DDE_3 DDE superfamily endonuclease 0.00032 11 28.60 406 465
DNA_pol3_delta DNA polymerase III, delta subunit 0.00016 12 20.50 474 562
DNA_pol3_gamma3 DNA polymerase III subunits gamma and tau domain III 1.9E-09 28 20.30 571 687
EFG_III Elongation Factor G, domain III 0.00048 11 27.00 647 679
Cytidylate_kin Cytidylate kinase 0.09 3 20.40 819 891
AAA_11 AAA domain 0.74 0 27.00 842 937

966

RuvB_N
Sigma54_activ_2
DNA_pol3_delta2
AAA_16
TsaE
AAA_11
ABC_tran
AAA_30
AAA_22
AAA_23
NACHT
RNA_helicase
AAA
AAA_5
Cytidylate_kin
DDE_3
DNA_pol3_delta
DNA_pol3_gamma3
EFG_III
Cytidylate_kin
AAA_11

References:

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

DNA_pol3_gamma3
17355988 The unstructured C-terminus of the tau subunit of Escherichia coli DNA polymerase III holoenzyme is the site of interaction with the alpha subunit. Nucleic Acids Res. 2007;35:2813-2824.

AAA_11

TsaE

DDE_3

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

DNA_pol3_delta
11432857 The delta and delta ' subunits of the DNA polymerase III holoenzyme are essential for initiation complex formation and processive elongation. J Biol Chem 2001;276:35165-35175.

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Sigma54_activ_2

DNA_pol3_delta2

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_23

AAA_22

EFG_III

Domain	Description	Evalue	Bits	GA	Start	End
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	9.5E-06	16	20.00	351	411
Sigma54_activ_2	Sigma-54 interaction domain	3.9E-05	14	25.00	358	496
DNA_pol3_delta2	DNA polymerase III, delta subunit	4.2E-26	82	27.00	360	514
AAA_16	AAA ATPase domain	1.7E-05	16	32.60	364	408
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00028	11	26.60	365	405
AAA_11	AAA domain	0.0017	8	27.00	366	408
ABC_tran	ABC transporter	0.00083	10	23.10	377	403
AAA_30	AAA domain	0.00037	11	27.00	378	489
AAA_22	AAA domain	3E-08	24	27.00	378	489
AAA_23	AAA domain	0.00016	13	27.00	379	422
NACHT	NACHT domain	3.5E-07	21	20.40	380	492
RNA_helicase	RNA helicase	3.4E-05	15	21.50	381	475
AAA	ATPase family associated with various cellular activities (AAA)	7.1E-11	33	20.80	381	511
AAA_5	AAA domain (dynein-related subfamily)	0.00012	12	20.80	383	482
Cytidylate_kin	Cytidylate kinase	0.0048	7	20.40	383	405
DDE_3	DDE superfamily endonuclease	0.00032	11	28.60	406	465
DNA_pol3_delta	DNA polymerase III, delta subunit	0.00016	12	20.50	474	562
DNA_pol3_gamma3	DNA polymerase III subunits gamma and tau domain III	1.9E-09	28	20.30	571	687
EFG_III	Elongation Factor G, domain III	0.00048	11	27.00	647	679
Cytidylate_kin	Cytidylate kinase	0.09	3	20.40	819	891
AAA_11	AAA domain	0.74	0	27.00	842	937