c2pfam

AT5G45750.1 :

Domain Description Evalue Bits GA Start End
Arf ADP-ribosylation factor family 1.5E-16 51 20.30 14 170
MMR_HSR1 GTPase of unknown function 1.1E-09 29 24.50 15 121
Ras Ras family 0 207 20.80 15 175
Roc Ras of Complex, Roc, domain of DAPkinase 3.4E-38 121 27.00 15 130
SRPRB Signal recognition particle receptor beta subunit 1E-05 15 20.50 15 157
Gtr1_RagA Gtr1/RagA G protein conserved region 4.5E-06 16 20.10 15 132
AAA_24 AAA domain 4.1E-05 14 27.00 15 59
ABC_tran ABC transporter 7.7E-05 13 23.10 15 39
PduV-EutP Ethanolamine utilisation - propanediol utilisation 0.00028 11 20.50 15 56
AAA_5 AAA domain (dynein-related subfamily) 0.00019 12 20.80 16 35
TniB Bacterial TniB protein 0.00024 11 20.10 16 38
RsgA_GTPase RsgA GTPase 2E-05 15 30.00 16 36
KAP_NTPase KAP family P-loop domain 1.5E-05 15 20.00 16 186
AAA_16 AAA ATPase domain 2.9E-05 15 32.60 16 47
AAA_14 AAA domain 6.3E-05 13 27.00 16 128
AAA_22 AAA domain 5.1E-05 14 27.00 17 54
GTP_EFTU Elongation factor Tu GTP binding domain 5.1E-06 16 20.20 40 164
AAA_22 AAA domain 0.48 1 27.00 107 133
RsgA_GTPase RsgA GTPase 0.077 3 30.00 112 166

216

Arf
MMR_HSR1
Ras
Roc
SRPRB
Gtr1_RagA
AAA_24
ABC_tran
PduV-EutP
AAA_5
TniB
RsgA_GTPase
KAP_NTPase
AAA_16
AAA_14
AAA_22
GTP_EFTU
AAA_22
RsgA_GTPase

References:

AAA_16

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

RsgA_GTPase

PduV-EutP
15516577 Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J Bacteriol. 2004;186:7635-7644.
10464203 The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J Bacteriol 1999;181:5317-5329.
10498708 The propanediol utilization (pdu) operon of Salmonella enterica serovar Typhimurium LT2 includes genes necessary for formation of polyhedral organelles involved in coenzyme B(12)-dependent 1, 2-propanediol degradation. J Bacteriol. 1999;181:5967-5975.

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

Roc

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

KAP_NTPase
15128444 A novel family of P-loop NTPases with an unusual phyletic distribution and transmembrane segments inserted within the NTPase domain. Genome Biol 2004;5:R30.

AAA_24

AAA_22

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

Domain	Description	Evalue	Bits	GA	Start	End
Arf	ADP-ribosylation factor family	1.5E-16	51	20.30	14	170
MMR_HSR1	GTPase of unknown function	1.1E-09	29	24.50	15	121
Ras	Ras family	0	207	20.80	15	175
Roc	Ras of Complex, Roc, domain of DAPkinase	3.4E-38	121	27.00	15	130
SRPRB	Signal recognition particle receptor beta subunit	1E-05	15	20.50	15	157
Gtr1_RagA	Gtr1/RagA G protein conserved region	4.5E-06	16	20.10	15	132
AAA_24	AAA domain	4.1E-05	14	27.00	15	59
ABC_tran	ABC transporter	7.7E-05	13	23.10	15	39
PduV-EutP	Ethanolamine utilisation - propanediol utilisation	0.00028	11	20.50	15	56
AAA_5	AAA domain (dynein-related subfamily)	0.00019	12	20.80	16	35
TniB	Bacterial TniB protein	0.00024	11	20.10	16	38
RsgA_GTPase	RsgA GTPase	2E-05	15	30.00	16	36
KAP_NTPase	KAP family P-loop domain	1.5E-05	15	20.00	16	186
AAA_16	AAA ATPase domain	2.9E-05	15	32.60	16	47
AAA_14	AAA domain	6.3E-05	13	27.00	16	128
AAA_22	AAA domain	5.1E-05	14	27.00	17	54
GTP_EFTU	Elongation factor Tu GTP binding domain	5.1E-06	16	20.20	40	164
AAA_22	AAA domain	0.48	1	27.00	107	133
RsgA_GTPase	RsgA GTPase	0.077	3	30.00	112	166