c2pfam

AT5G46030.1 :

Domain Description Evalue Bits GA Start End
Elf1 Transcription elongation factor Elf1 like 8.7E-32 99 25.30 2 78
zf-C2H2_4 C2H2-type zinc finger 0.063 5 27.00 23 29
UBZ_FAAP20 Ubiquitin-binding zinc-finger 0.031 4 25.00 24 29
UBZ_FAAP20 Ubiquitin-binding zinc-finger 0.0068 6 25.00 48 63
FYDLN_acid Protein of unknown function (FYDLN_acid) 0.0078 7 22.70 48 111
zf-C2H2_4 C2H2-type zinc finger 0.0064 8 27.00 49 58
SoPB_HTH Centromere-binding protein HTH domain 8.2E-05 13 27.00 53 88
Imm71 Immunity protein 71 2.1E-05 15 27.00 58 96
RNA_pol_3_Rpc31 DNA-directed RNA polymerase III subunit Rpc31 4.5E-06 17 22.80 72 110
DUF4611 Domain of unknown function (DUF4611) 0.00013 12 32.10 75 115
Myc_N Myc amino-terminal region 5.5E-05 13 22.20 76 114
TRAP_alpha Translocon-associated protein (TRAP), alpha subunit 0.0019 7 23.10 80 110
WRNPLPNID Putative WW-binding domain and destruction box 0.0035 8 27.00 81 110
DNA_pol_phi DNA polymerase phi 2.9E-05 12 19.50 81 110
Prothymosin Prothymosin/parathymosin family 4.4E-05 14 23.90 81 117
Astro_capsid_p Turkey astrovirus capsid protein 0.0031 7 25.00 82 112

120

Elf1
zf-C2H2_4
UBZ_FAAP20
UBZ_FAAP20
FYDLN_acid
zf-C2H2_4
SoPB_HTH
Imm71
RNA_pol_3_Rpc31
DUF4611
Myc_N
TRAP_alpha
WRNPLPNID
DNA_pol_phi
Prothymosin
Astro_capsid_p

References:

DNA_pol_phi
12093911 The fifth essential DNA polymerase phi in Saccharomyces cerevisiae is localized to the nucleolus and plays an important role in synthesis of rRNA. Proc Natl Acad Sci U S A 2002;99:9133-9138.

Prothymosin
10854063 Nuclear distribution of prothymosin alpha and parathymosin: evidence that prothymosin alpha is associated with RNA synthesis processing and parathymosin with early DNA replication. Exp Cell Res 2000;257:152-161.

zf-C2H2_4

SoPB_HTH

UBZ_FAAP20

FYDLN_acid

Myc_N
9619443 The molecular role of Myc in growth and transformation: recent discoveries lead to new insights. FASEB J 1998;12:633-651.
9175477 Myc target genes. Trends Biochem Sci 1997;22:177-181.

Elf1
16260625 Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae. Mol Cell Biol 2005;25:10122-10135.

DUF4611

WRNPLPNID

RNA_pol_3_Rpc31
16877568 Ancient origin, functional conservation and fast evolution of DNA-dependent RNA polymerase III. Nucleic Acids Res. 2006;34:3615-3624.

TRAP_alpha
8050590 The N-terminal region of the alpha-subunit of the TRAP complex has a conserved cluster of negative charges. FEBS Lett 1994;349:324-326.

Astro_capsid_p
16404992 Molecular characterization of the capsid gene of two serotypes of turkey astroviruses. Avian Dis. 2005;49:514-519.

Imm71

Domain	Description	Evalue	Bits	GA	Start	End
Elf1	Transcription elongation factor Elf1 like	8.7E-32	99	25.30	2	78
zf-C2H2_4	C2H2-type zinc finger	0.063	5	27.00	23	29
UBZ_FAAP20	Ubiquitin-binding zinc-finger	0.031	4	25.00	24	29
UBZ_FAAP20	Ubiquitin-binding zinc-finger	0.0068	6	25.00	48	63
FYDLN_acid	Protein of unknown function (FYDLN_acid)	0.0078	7	22.70	48	111
zf-C2H2_4	C2H2-type zinc finger	0.0064	8	27.00	49	58
SoPB_HTH	Centromere-binding protein HTH domain	8.2E-05	13	27.00	53	88
Imm71	Immunity protein 71	2.1E-05	15	27.00	58	96
RNA_pol_3_Rpc31	DNA-directed RNA polymerase III subunit Rpc31	4.5E-06	17	22.80	72	110
DUF4611	Domain of unknown function (DUF4611)	0.00013	12	32.10	75	115
Myc_N	Myc amino-terminal region	5.5E-05	13	22.20	76	114
TRAP_alpha	Translocon-associated protein (TRAP), alpha subunit	0.0019	7	23.10	80	110
WRNPLPNID	Putative WW-binding domain and destruction box	0.0035	8	27.00	81	110
DNA_pol_phi	DNA polymerase phi	2.9E-05	12	19.50	81	110
Prothymosin	Prothymosin/parathymosin family	4.4E-05	14	23.90	81	117
Astro_capsid_p	Turkey astrovirus capsid protein	0.0031	7	25.00	82	112