c2pfam

AT5G46100.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.042 5 25.00 54 82
PPR_2 PPR repeat family 0.095 3 30.00 59 85
PPR_long Pentacotripeptide-repeat region of PRORP 5.1E-06 16 27.00 72 165
Cys_knot Cystine-knot domain 0.053 4 21.30 74 98
PPR PPR repeat 0.0032 8 25.00 94 117
PPR_2 PPR repeat family 0.0011 9 30.00 98 128
PPR_3 Pentatricopeptide repeat domain 4.1E-08 23 25.00 107 166
PPR_2 PPR repeat family 4.8E-12 36 30.00 120 168
PPR PPR repeat 0.0045 8 25.00 124 152
PPR_1 PPR repeat 3.8E-05 14 23.80 151 180
ATP13 Mitochondrial ATPase expression 0.12 2 26.70 152 179
PPR_2 PPR repeat family 7.3E-17 52 30.00 156 204
PPR PPR repeat 0.00024 12 25.00 158 188
PPR_long Pentacotripeptide-repeat region of PRORP 6.1E-11 32 27.00 171 277
PPR_3 Pentatricopeptide repeat domain 9.4E-13 38 25.00 178 235
PPR_1 PPR repeat 3E-18 56 23.80 186 219
DUF4074 Domain of unknown function (DUF4074) 0.013 6 22.30 187 214
PPR PPR repeat 2.9E-12 36 25.00 193 223
PPR_2 PPR repeat family 1.4E-18 57 30.00 194 238
AEP1 ATPase expression protein 1 0.0027 7 27.00 194 244
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.0048 7 28.10 198 220
TPR_2 Tetratricopeptide repeat 0.072 4 22.40 206 222
TPR_19 Tetratricopeptide repeat 0.24 2 25.00 206 222
PEP_hydrolase Phosphoenolpyruvate hydrolase-like 0.0035 7 33.80 209 259
ATP13 Mitochondrial ATPase expression 0.024 5 26.70 217 255
Cys_knot Cystine-knot domain 0.014 6 21.30 218 294
PPR_1 PPR repeat 1.5E-14 44 23.80 221 254
PPR_2 PPR repeat family 9.2E-23 70 30.00 225 274
PPR_3 Pentatricopeptide repeat domain 4.3E-13 39 25.00 227 270
DUF4809 Domain of unknown function (DUF4809) 0.31 1 27.00 227 276
PPR PPR repeat 6E-12 35 25.00 228 258
MRP-S27 Mitochondrial 28S ribosomal protein S27 6.6E-06 15 25.90 229 292
TPR_2 Tetratricopeptide repeat 0.53 1 22.40 240 252
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.056 4 29.50 248 260
PPR_3 Pentatricopeptide repeat domain 2.4E-14 43 25.00 250 305
PPR_1 PPR repeat 3.6E-15 46 23.80 256 288
PPR PPR repeat 7.9E-11 32 25.00 263 293
PPR_2 PPR repeat family 5.5E-18 55 30.00 265 309
PPR_long Pentacotripeptide-repeat region of PRORP 1.5E-07 21 27.00 280 366
PPR_3 Pentatricopeptide repeat domain 1.3E-09 28 25.00 284 335
PPR_1 PPR repeat 1.8E-16 50 23.80 291 323
Cys_knot Cystine-knot domain 0.72 0 21.30 291 311
DUF4074 Domain of unknown function (DUF4074) 0.089 3 22.30 293 319
ATP13 Mitochondrial ATPase expression 0.019 5 26.70 293 322
PPR_2 PPR repeat family 5.9E-13 39 30.00 295 332
PEP_hydrolase Phosphoenolpyruvate hydrolase-like 0.68 -1 33.80 296 328
PPR PPR repeat 7.5E-10 29 25.00 298 327
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.8 0 28.10 303 323
TPR_19 Tetratricopeptide repeat 0.21 2 25.00 309 324
PPR_3 Pentatricopeptide repeat domain 2E-06 18 25.00 319 372
PPR_1 PPR repeat 6.1E-07 19 23.80 327 358
ATP13 Mitochondrial ATPase expression 0.96 -1 26.70 328 358
PPR_2 PPR repeat family 9.4E-08 22 30.00 335 374
PPR PPR repeat 0.00016 12 25.00 335 362
SPOB_a Sensor_kinase_SpoOB-type, alpha-helical domain 0.27 1 28.10 338 359
PEP_hydrolase Phosphoenolpyruvate hydrolase-like 0.21 1 33.80 338 361
PPR_1 PPR repeat 0.31 1 23.80 362 372
MRP-S27 Mitochondrial 28S ribosomal protein S27 0.082 2 25.90 370 436
DUF4809 Domain of unknown function (DUF4809) 0.00028 11 27.00 374 448
PPR_2 PPR repeat family 1.5E-05 15 30.00 378 420
PPR PPR repeat 0.071 4 25.00 387 404
PPR_long Pentacotripeptide-repeat region of PRORP 3.1E-05 13 27.00 390 441
Exog_C Endo/exonuclease (EXOG) C-terminal domain 0.032 4 29.50 391 400
PPR_3 Pentatricopeptide repeat domain 0.00032 11 25.00 399 451
PPR_1 PPR repeat 1E-07 22 23.80 402 434
ATP13 Mitochondrial ATPase expression 1.5E-05 15 26.70 407 436
AEP1 ATPase expression protein 1 0.098 2 27.00 408 443
PPR_2 PPR repeat family 5E-07 20 30.00 412 450
PPR PPR repeat 1.5E-06 19 25.00 413 439
TPR_19 Tetratricopeptide repeat 0.0037 8 25.00 414 434
TPR_2 Tetratricopeptide repeat 0.25 2 22.40 417 431

472

PPR
PPR_2
PPR_long
Cys_knot
PPR
PPR_2
PPR_3
PPR_2
PPR
PPR_1
ATP13
PPR_2
PPR
PPR_long
PPR_3
PPR_1
DUF4074
PPR
PPR_2
AEP1
SPOB_a
TPR_2
TPR_19
PEP_hydrolase
ATP13
Cys_knot
PPR_1
PPR_2
PPR_3
DUF4809
PPR
MRP-S27
TPR_2
Exog_C
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
Cys_knot
DUF4074
ATP13
PPR_2
PEP_hydrolase
PPR
SPOB_a
TPR_19
PPR_3
PPR_1
ATP13
PPR_2
PPR
SPOB_a
PEP_hydrolase
PPR_1
MRP-S27
DUF4809
PPR_2
PPR
PPR_long
Exog_C
PPR_3
PPR_1
ATP13
AEP1
PPR_2
PPR
TPR_19
TPR_2

References:

AEP1

Exog_C

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

DUF4074

PEP_hydrolase

Cys_knot
7687569 The modular architecture of a new family of growth regulators related to connective tissue growth factor. FEBS Lett 1993;327:125-130.

DUF4809

ATP13

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.042	5	25.00	54	82
PPR_2	PPR repeat family	0.095	3	30.00	59	85
PPR_long	Pentacotripeptide-repeat region of PRORP	5.1E-06	16	27.00	72	165
Cys_knot	Cystine-knot domain	0.053	4	21.30	74	98
PPR	PPR repeat	0.0032	8	25.00	94	117
PPR_2	PPR repeat family	0.0011	9	30.00	98	128
PPR_3	Pentatricopeptide repeat domain	4.1E-08	23	25.00	107	166
PPR_2	PPR repeat family	4.8E-12	36	30.00	120	168
PPR	PPR repeat	0.0045	8	25.00	124	152
PPR_1	PPR repeat	3.8E-05	14	23.80	151	180
ATP13	Mitochondrial ATPase expression	0.12	2	26.70	152	179
PPR_2	PPR repeat family	7.3E-17	52	30.00	156	204
PPR	PPR repeat	0.00024	12	25.00	158	188
PPR_long	Pentacotripeptide-repeat region of PRORP	6.1E-11	32	27.00	171	277
PPR_3	Pentatricopeptide repeat domain	9.4E-13	38	25.00	178	235
PPR_1	PPR repeat	3E-18	56	23.80	186	219
DUF4074	Domain of unknown function (DUF4074)	0.013	6	22.30	187	214
PPR	PPR repeat	2.9E-12	36	25.00	193	223
PPR_2	PPR repeat family	1.4E-18	57	30.00	194	238
AEP1	ATPase expression protein 1	0.0027	7	27.00	194	244
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.0048	7	28.10	198	220
TPR_2	Tetratricopeptide repeat	0.072	4	22.40	206	222
TPR_19	Tetratricopeptide repeat	0.24	2	25.00	206	222
PEP_hydrolase	Phosphoenolpyruvate hydrolase-like	0.0035	7	33.80	209	259
ATP13	Mitochondrial ATPase expression	0.024	5	26.70	217	255
Cys_knot	Cystine-knot domain	0.014	6	21.30	218	294
PPR_1	PPR repeat	1.5E-14	44	23.80	221	254
PPR_2	PPR repeat family	9.2E-23	70	30.00	225	274
PPR_3	Pentatricopeptide repeat domain	4.3E-13	39	25.00	227	270
DUF4809	Domain of unknown function (DUF4809)	0.31	1	27.00	227	276
PPR	PPR repeat	6E-12	35	25.00	228	258
MRP-S27	Mitochondrial 28S ribosomal protein S27	6.6E-06	15	25.90	229	292
TPR_2	Tetratricopeptide repeat	0.53	1	22.40	240	252
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.056	4	29.50	248	260
PPR_3	Pentatricopeptide repeat domain	2.4E-14	43	25.00	250	305
PPR_1	PPR repeat	3.6E-15	46	23.80	256	288
PPR	PPR repeat	7.9E-11	32	25.00	263	293
PPR_2	PPR repeat family	5.5E-18	55	30.00	265	309
PPR_long	Pentacotripeptide-repeat region of PRORP	1.5E-07	21	27.00	280	366
PPR_3	Pentatricopeptide repeat domain	1.3E-09	28	25.00	284	335
PPR_1	PPR repeat	1.8E-16	50	23.80	291	323
Cys_knot	Cystine-knot domain	0.72	0	21.30	291	311
DUF4074	Domain of unknown function (DUF4074)	0.089	3	22.30	293	319
ATP13	Mitochondrial ATPase expression	0.019	5	26.70	293	322
PPR_2	PPR repeat family	5.9E-13	39	30.00	295	332
PEP_hydrolase	Phosphoenolpyruvate hydrolase-like	0.68	-1	33.80	296	328
PPR	PPR repeat	7.5E-10	29	25.00	298	327
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.8	0	28.10	303	323
TPR_19	Tetratricopeptide repeat	0.21	2	25.00	309	324
PPR_3	Pentatricopeptide repeat domain	2E-06	18	25.00	319	372
PPR_1	PPR repeat	6.1E-07	19	23.80	327	358
ATP13	Mitochondrial ATPase expression	0.96	-1	26.70	328	358
PPR_2	PPR repeat family	9.4E-08	22	30.00	335	374
PPR	PPR repeat	0.00016	12	25.00	335	362
SPOB_a	Sensor_kinase_SpoOB-type, alpha-helical domain	0.27	1	28.10	338	359
PEP_hydrolase	Phosphoenolpyruvate hydrolase-like	0.21	1	33.80	338	361
PPR_1	PPR repeat	0.31	1	23.80	362	372
MRP-S27	Mitochondrial 28S ribosomal protein S27	0.082	2	25.90	370	436
DUF4809	Domain of unknown function (DUF4809)	0.00028	11	27.00	374	448
PPR_2	PPR repeat family	1.5E-05	15	30.00	378	420
PPR	PPR repeat	0.071	4	25.00	387	404
PPR_long	Pentacotripeptide-repeat region of PRORP	3.1E-05	13	27.00	390	441
Exog_C	Endo/exonuclease (EXOG) C-terminal domain	0.032	4	29.50	391	400
PPR_3	Pentatricopeptide repeat domain	0.00032	11	25.00	399	451
PPR_1	PPR repeat	1E-07	22	23.80	402	434
ATP13	Mitochondrial ATPase expression	1.5E-05	15	26.70	407	436
AEP1	ATPase expression protein 1	0.098	2	27.00	408	443
PPR_2	PPR repeat family	5E-07	20	30.00	412	450
PPR	PPR repeat	1.5E-06	19	25.00	413	439
TPR_19	Tetratricopeptide repeat	0.0037	8	25.00	414	434
TPR_2	Tetratricopeptide repeat	0.25	2	22.40	417	431