c2pfam

AT5G46330.1 :

Domain Description Evalue Bits GA Start End
LRRNT_2 Leucine rich repeat N-terminal domain 1.8E-12 38 20.70 29 69
DUF5612 Domain of unknown function (DUF5612) 0.13 2 25.00 91 137
LRR_6 Leucine Rich repeat 0.017 6 23.40 95 110
LRR_8 Leucine rich repeat 4.2E-08 23 27.00 97 156
LRR_4 Leucine Rich repeats (2 copies) 0.0027 8 27.00 98 127
LRR_1 Leucine Rich Repeat 0.0011 10 20.60 98 119
LRR_4 Leucine Rich repeats (2 copies) 0.037 5 27.00 132 159
LRR_4 Leucine Rich repeats (2 copies) 0.15 3 27.00 148 162
LRR_1 Leucine Rich Repeat 0.3 3 20.60 148 165
LRR_8 Leucine rich repeat 0.00021 11 27.00 168 204
DUF5612 Domain of unknown function (DUF5612) 0.82 0 25.00 188 233
LRR_4 Leucine Rich repeats (2 copies) 8.9E-07 20 27.00 193 228
LRR_8 Leucine rich repeat 5.7E-08 23 27.00 213 252
LRR_8 Leucine rich repeat 7.4E-09 26 27.00 217 276
LRR_1 Leucine Rich Repeat 3E-05 15 20.60 217 239
LRR_6 Leucine Rich repeat 0.00099 10 23.40 217 231
LRR_5 BspA type Leucine rich repeat region (6 copies) 0.085 3 27.70 236 321
LRR_1 Leucine Rich Repeat 0.23 3 20.60 241 263
LRR_8 Leucine rich repeat 1.7E-07 21 27.00 241 300
LRR_4 Leucine Rich repeats (2 copies) 8.9E-05 13 27.00 241 279
LRR_6 Leucine Rich repeat 0.83 0 23.40 263 279
LRR_8 Leucine rich repeat 1.8E-07 21 27.00 265 324
LRR_1 Leucine Rich Repeat 0.24 3 20.60 266 287
LRR_4 Leucine Rich repeats (2 copies) 2.4E-06 18 27.00 289 329
LRR_6 Leucine Rich repeat 0.17 3 23.40 312 324
LRR_1 Leucine Rich Repeat 0.061 5 20.60 337 359
LRR_4 Leucine Rich repeats (2 copies) 1.3E-05 16 27.00 337 373
LRR_8 Leucine rich repeat 2E-07 21 27.00 337 396
FNIP FNIP Repeat 0.51 1 20.90 347 347
LRR_6 Leucine Rich repeat 0.02 5 23.40 360 375
LRR_1 Leucine Rich Repeat 0.52 2 20.60 361 380
LRR_4 Leucine Rich repeats (2 copies) 1.6E-06 19 27.00 384 419
LRR_8 Leucine rich repeat 2.1E-08 24 27.00 385 443
LRR_1 Leucine Rich Repeat 0.43 2 20.60 385 407
LRR_5 BspA type Leucine rich repeat region (6 copies) 0.009 6 27.70 405 465
LRR_6 Leucine Rich repeat 0.0018 9 23.40 407 423
LRR_1 Leucine Rich Repeat 0.0055 8 20.60 410 429
FNIP FNIP Repeat 0.85 0 20.90 422 441
LRR_1 Leucine Rich Repeat 0.11 4 20.60 432 454
LRR_8 Leucine rich repeat 7E-07 19 27.00 432 491
LRR_4 Leucine Rich repeats (2 copies) 1.2E-05 16 27.00 432 472
LRR_6 Leucine Rich repeat 0.0062 7 23.40 453 469
LRR_8 Leucine rich repeat 7.6E-09 25 27.00 455 514
LRR_1 Leucine Rich Repeat 0.071 4 20.60 456 478
LRR_6 Leucine Rich repeat 0.072 4 23.40 478 493
LRR_4 Leucine Rich repeats (2 copies) 0.00015 12 27.00 479 518
LRR_8 Leucine rich repeat 8.5E-07 19 27.00 480 539
LRR_1 Leucine Rich Repeat 0.0088 7 20.60 480 502
DUF5612 Domain of unknown function (DUF5612) 0.42 1 25.00 499 545
LRR_1 Leucine Rich Repeat 0.49 2 20.60 505 526
LRR_8 Leucine rich repeat 4.4E-10 29 27.00 543 587
LRR_4 Leucine Rich repeats (2 copies) 3.2E-07 21 27.00 553 591
LRR_1 Leucine Rich Repeat 0.0062 8 20.60 553 574
LRR_6 Leucine Rich repeat 0.26 2 23.40 553 565
FNIP FNIP Repeat 0.00028 11 20.90 565 600
LRR_6 Leucine Rich repeat 0.061 4 23.40 576 589
LRR_1 Leucine Rich Repeat 0.018 6 20.60 576 598
LRR_6 Leucine Rich repeat 0.99 0 23.40 601 613
LRR_4 Leucine Rich repeats (2 copies) 0.011 7 27.00 601 641
LRR_8 Leucine rich repeat 1.7E-06 18 27.00 601 660
FNIP FNIP Repeat 0.00041 11 20.90 616 650
LRR_1 Leucine Rich Repeat 0.25 3 20.60 629 648
LRR_4 Leucine Rich repeats (2 copies) 0.00024 12 27.00 651 687
LRR_8 Leucine rich repeat 6.2E-09 26 27.00 652 709
LRR_1 Leucine Rich Repeat 0.0028 9 20.60 652 672
LRR_5 BspA type Leucine rich repeat region (6 copies) 0.00072 10 27.70 670 757
LRR_6 Leucine Rich repeat 0.62 1 23.40 672 686
LRR_1 Leucine Rich Repeat 0.54 2 20.60 677 692
LRR_8 Leucine rich repeat 3.3E-11 33 27.00 678 734
LRR_4 Leucine Rich repeats (2 copies) 3.8E-06 18 27.00 701 738
LRR_8 Leucine rich repeat 9.7E-11 32 27.00 702 758
LRR_1 Leucine Rich Repeat 0.0021 9 20.60 702 720
LRR_6 Leucine Rich repeat 0.92 0 23.40 702 713
LRR_6 Leucine Rich repeat 3.3E-05 14 23.40 721 738
LRR_4 Leucine Rich repeats (2 copies) 4.4E-06 17 27.00 722 757
LRR_1 Leucine Rich Repeat 0.0004 11 20.60 724 745
DUF5612 Domain of unknown function (DUF5612) 0.5 0 25.00 727 765
FNIP FNIP Repeat 0.95 0 20.90 736 753
LRR_6 Leucine Rich repeat 0.032 5 23.40 746 758
LRR_1 Leucine Rich Repeat 0.31 3 20.60 748 764
Rhabdo_glycop Rhabdovirus spike glycoprotein 0.00015 10 22.00 761 840
Mid2 Mid2 like cell wall stress sensor 0.00011 12 23.10 797 843
UPF0560 Uncharacterised protein family UPF0560 0.00014 11 19.40 805 925
TMEM154 TMEM154 protein family 9.2E-05 12 30.30 806 846
ABC1 ABC1 family 5.6E-06 17 20.60 864 900
Pkinase Protein kinase domain 0 146 20.40 872 1152
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 0 130 23.10 874 1153
APH Phosphotransferase enzyme family 0.00012 12 22.40 993 1021

1173

LRRNT_2
DUF5612
LRR_6
LRR_8
LRR_4
LRR_1
LRR_4
LRR_4
LRR_1
LRR_8
DUF5612
LRR_4
LRR_8
LRR_8
LRR_1
LRR_6
LRR_5
LRR_1
LRR_8
LRR_4
LRR_6
LRR_8
LRR_1
LRR_4
LRR_6
LRR_1
LRR_4
LRR_8
FNIP
LRR_6
LRR_1
LRR_4
LRR_8
LRR_1
LRR_5
LRR_6
LRR_1
FNIP
LRR_1
LRR_8
LRR_4
LRR_6
LRR_8
LRR_1
LRR_6
LRR_4
LRR_8
LRR_1
DUF5612
LRR_1
LRR_8
LRR_4
LRR_1
LRR_6
FNIP
LRR_6
LRR_1
LRR_6
LRR_4
LRR_8
FNIP
LRR_1
LRR_4
LRR_8
LRR_1
LRR_5
LRR_6
LRR_1
LRR_8
LRR_4
LRR_8
LRR_1
LRR_6
LRR_6
LRR_4
LRR_1
DUF5612
FNIP
LRR_6
LRR_1
Rhabdo_glycop
Mid2
UPF0560
TMEM154
ABC1
Pkinase
PK_Tyr_Ser-Thr
APH

References:

APH
2163618 Cloning of aminoglycoside phosphotransferase (APH) gene from antibiotic- producing strain of Bacillus circulans into a high-expression vector, pKK223-3. Purification, properties and location of the enzyme [published erratum appears in Biochem J 1991 Feb 1 Biochem J 1990;268:671-677.
2167474 PCR cloning of a streptomycin phosphotransferase (aphE) gene from Streptomyces griseus ATCC 12475. Nucleic Acids Res 1990;18:4615-4615.

DUF5612

ABC1
1648478 ABC1, a novel yeast nuclear gene has a dual function in mitochondria: it suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J 1991;10:2023-2031.
9422602 Identification and characterization of aarF, a locus required for production of ubiquinone in Providencia stuartii and Escherichia coli and for expression of 2'-N-acetyltransferase in P. stuartii. J Bacteriol 1998;180:128-135.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRRNT_2
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.

Rhabdo_glycop
1660200 Membrane fusion activity, oligomerization, and assembly of the rabies virus glycoprotein. Virology 1991;185:681-688.
9000093 Low pH-induced pore formation by spike proteins of enveloped viruses. J Gen Virol 1996;77:3025-3032.

LRR_8

LRR_6

LRR_5

LRR_4

UPF0560

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

FNIP

TMEM154

Mid2
11113201 Wsc1 and Mid2 are cell surface sensors for cell wall integrity signaling that act through Rom2, a guanine nucleotide exchange factor for Rho1. Mol Cell Biol 2001;21:271-280.

PK_Tyr_Ser-Thr

Domain	Description	Evalue	Bits	GA	Start	End
LRRNT_2	Leucine rich repeat N-terminal domain	1.8E-12	38	20.70	29	69
DUF5612	Domain of unknown function (DUF5612)	0.13	2	25.00	91	137
LRR_6	Leucine Rich repeat	0.017	6	23.40	95	110
LRR_8	Leucine rich repeat	4.2E-08	23	27.00	97	156
LRR_4	Leucine Rich repeats (2 copies)	0.0027	8	27.00	98	127
LRR_1	Leucine Rich Repeat	0.0011	10	20.60	98	119
LRR_4	Leucine Rich repeats (2 copies)	0.037	5	27.00	132	159
LRR_4	Leucine Rich repeats (2 copies)	0.15	3	27.00	148	162
LRR_1	Leucine Rich Repeat	0.3	3	20.60	148	165
LRR_8	Leucine rich repeat	0.00021	11	27.00	168	204
DUF5612	Domain of unknown function (DUF5612)	0.82	0	25.00	188	233
LRR_4	Leucine Rich repeats (2 copies)	8.9E-07	20	27.00	193	228
LRR_8	Leucine rich repeat	5.7E-08	23	27.00	213	252
LRR_8	Leucine rich repeat	7.4E-09	26	27.00	217	276
LRR_1	Leucine Rich Repeat	3E-05	15	20.60	217	239
LRR_6	Leucine Rich repeat	0.00099	10	23.40	217	231
LRR_5	BspA type Leucine rich repeat region (6 copies)	0.085	3	27.70	236	321
LRR_1	Leucine Rich Repeat	0.23	3	20.60	241	263
LRR_8	Leucine rich repeat	1.7E-07	21	27.00	241	300
LRR_4	Leucine Rich repeats (2 copies)	8.9E-05	13	27.00	241	279
LRR_6	Leucine Rich repeat	0.83	0	23.40	263	279
LRR_8	Leucine rich repeat	1.8E-07	21	27.00	265	324
LRR_1	Leucine Rich Repeat	0.24	3	20.60	266	287
LRR_4	Leucine Rich repeats (2 copies)	2.4E-06	18	27.00	289	329
LRR_6	Leucine Rich repeat	0.17	3	23.40	312	324
LRR_1	Leucine Rich Repeat	0.061	5	20.60	337	359
LRR_4	Leucine Rich repeats (2 copies)	1.3E-05	16	27.00	337	373
LRR_8	Leucine rich repeat	2E-07	21	27.00	337	396
FNIP	FNIP Repeat	0.51	1	20.90	347	347
LRR_6	Leucine Rich repeat	0.02	5	23.40	360	375
LRR_1	Leucine Rich Repeat	0.52	2	20.60	361	380
LRR_4	Leucine Rich repeats (2 copies)	1.6E-06	19	27.00	384	419
LRR_8	Leucine rich repeat	2.1E-08	24	27.00	385	443
LRR_1	Leucine Rich Repeat	0.43	2	20.60	385	407
LRR_5	BspA type Leucine rich repeat region (6 copies)	0.009	6	27.70	405	465
LRR_6	Leucine Rich repeat	0.0018	9	23.40	407	423
LRR_1	Leucine Rich Repeat	0.0055	8	20.60	410	429
FNIP	FNIP Repeat	0.85	0	20.90	422	441
LRR_1	Leucine Rich Repeat	0.11	4	20.60	432	454
LRR_8	Leucine rich repeat	7E-07	19	27.00	432	491
LRR_4	Leucine Rich repeats (2 copies)	1.2E-05	16	27.00	432	472
LRR_6	Leucine Rich repeat	0.0062	7	23.40	453	469
LRR_8	Leucine rich repeat	7.6E-09	25	27.00	455	514
LRR_1	Leucine Rich Repeat	0.071	4	20.60	456	478
LRR_6	Leucine Rich repeat	0.072	4	23.40	478	493
LRR_4	Leucine Rich repeats (2 copies)	0.00015	12	27.00	479	518
LRR_8	Leucine rich repeat	8.5E-07	19	27.00	480	539
LRR_1	Leucine Rich Repeat	0.0088	7	20.60	480	502
DUF5612	Domain of unknown function (DUF5612)	0.42	1	25.00	499	545
LRR_1	Leucine Rich Repeat	0.49	2	20.60	505	526
LRR_8	Leucine rich repeat	4.4E-10	29	27.00	543	587
LRR_4	Leucine Rich repeats (2 copies)	3.2E-07	21	27.00	553	591
LRR_1	Leucine Rich Repeat	0.0062	8	20.60	553	574
LRR_6	Leucine Rich repeat	0.26	2	23.40	553	565
FNIP	FNIP Repeat	0.00028	11	20.90	565	600
LRR_6	Leucine Rich repeat	0.061	4	23.40	576	589
LRR_1	Leucine Rich Repeat	0.018	6	20.60	576	598
LRR_6	Leucine Rich repeat	0.99	0	23.40	601	613
LRR_4	Leucine Rich repeats (2 copies)	0.011	7	27.00	601	641
LRR_8	Leucine rich repeat	1.7E-06	18	27.00	601	660
FNIP	FNIP Repeat	0.00041	11	20.90	616	650
LRR_1	Leucine Rich Repeat	0.25	3	20.60	629	648
LRR_4	Leucine Rich repeats (2 copies)	0.00024	12	27.00	651	687
LRR_8	Leucine rich repeat	6.2E-09	26	27.00	652	709
LRR_1	Leucine Rich Repeat	0.0028	9	20.60	652	672
LRR_5	BspA type Leucine rich repeat region (6 copies)	0.00072	10	27.70	670	757
LRR_6	Leucine Rich repeat	0.62	1	23.40	672	686
LRR_1	Leucine Rich Repeat	0.54	2	20.60	677	692
LRR_8	Leucine rich repeat	3.3E-11	33	27.00	678	734
LRR_4	Leucine Rich repeats (2 copies)	3.8E-06	18	27.00	701	738
LRR_8	Leucine rich repeat	9.7E-11	32	27.00	702	758
LRR_1	Leucine Rich Repeat	0.0021	9	20.60	702	720
LRR_6	Leucine Rich repeat	0.92	0	23.40	702	713
LRR_6	Leucine Rich repeat	3.3E-05	14	23.40	721	738
LRR_4	Leucine Rich repeats (2 copies)	4.4E-06	17	27.00	722	757
LRR_1	Leucine Rich Repeat	0.0004	11	20.60	724	745
DUF5612	Domain of unknown function (DUF5612)	0.5	0	25.00	727	765
FNIP	FNIP Repeat	0.95	0	20.90	736	753
LRR_6	Leucine Rich repeat	0.032	5	23.40	746	758
LRR_1	Leucine Rich Repeat	0.31	3	20.60	748	764
Rhabdo_glycop	Rhabdovirus spike glycoprotein	0.00015	10	22.00	761	840
Mid2	Mid2 like cell wall stress sensor	0.00011	12	23.10	797	843
UPF0560	Uncharacterised protein family UPF0560	0.00014	11	19.40	805	925
TMEM154	TMEM154 protein family	9.2E-05	12	30.30	806	846
ABC1	ABC1 family	5.6E-06	17	20.60	864	900
Pkinase	Protein kinase domain	0	146	20.40	872	1152
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	0	130	23.10	874	1153
APH	Phosphotransferase enzyme family	0.00012	12	22.40	993	1021