c2pfam

AT5G46460.1 :

Domain Description Evalue Bits GA Start End
PPR PPR repeat 0.11 3 25.00 41 60
PPR_2 PPR repeat family 0.81 -1 30.00 41 60
TPR_19 Tetratricopeptide repeat 0.31 1 25.00 48 62
PPR_1 PPR repeat 0.12 2 23.80 50 60
PPR_1 PPR repeat 4.5E-07 19 23.80 63 92
PPR_2 PPR repeat family 5.3E-07 19 30.00 64 93
PPR_3 Pentatricopeptide repeat domain 0.1 2 25.00 65 92
PPR PPR repeat 1.1E-07 21 25.00 68 95
TPR_10 Tetratricopeptide repeat 0.77 -1 27.50 76 91
PPR_2 PPR repeat family 1.6E-12 37 30.00 95 128
PPR_1 PPR repeat 8.2E-10 28 23.80 95 123
PPR_3 Pentatricopeptide repeat domain 0.00065 9 25.00 96 126
PPR PPR repeat 7.4E-12 35 25.00 98 127
TPR_7 Tetratricopeptide repeat 0.47 0 27.90 107 122
TPR_19 Tetratricopeptide repeat 0.27 1 25.00 111 151
PPR_2 PPR repeat family 3.3E-08 23 30.00 127 155
PPR_3 Pentatricopeptide repeat domain 0.012 5 25.00 127 154
PPR_1 PPR repeat 1.7E-08 24 23.80 127 154
PPR PPR repeat 1.8E-09 27 25.00 129 155
TPR_7 Tetratricopeptide repeat 0.25 1 27.90 131 151
TPR_14 Tetratricopeptide repeat 0.036 5 23.50 131 153
TPR_10 Tetratricopeptide repeat 0.99 -1 27.50 139 152
TPR_19 Tetratricopeptide repeat 0.0023 8 25.00 141 186
PPR_2 PPR repeat family 1.4E-09 28 30.00 157 189
PPR_1 PPR repeat 9.9E-08 21 23.80 158 185
TPR_14 Tetratricopeptide repeat 0.021 6 23.50 160 184
PPR_3 Pentatricopeptide repeat domain 0.016 5 25.00 161 186
PPR PPR repeat 9.9E-11 31 25.00 161 190
TPR_7 Tetratricopeptide repeat 0.046 4 27.90 162 184
TPR_10 Tetratricopeptide repeat 0.077 3 27.50 165 184
TPR_16 Tetratricopeptide repeat 0.07 3 32.70 167 184
PPR_2 PPR repeat family 3.3E-10 30 30.00 188 237
PPR_1 PPR repeat 4.8E-05 13 23.80 189 216
PPR PPR repeat 3.4E-06 17 25.00 191 219
PPR PPR repeat 0.26 1 25.00 265 285
PPR_3 Pentatricopeptide repeat domain 2.9E-07 20 25.00 290 336
PPR_2 PPR repeat family 3.3E-10 30 30.00 291 336
TPR_14 Tetratricopeptide repeat 0.84 1 23.50 292 318
PPR PPR repeat 6.8E-08 22 25.00 293 321
PPR_1 PPR repeat 0.34 0 23.80 293 317
PPR_3 Pentatricopeptide repeat domain 0.37 1 25.00 354 390
PPR_2 PPR repeat family 0.022 5 30.00 363 391
PPR PPR repeat 0.0014 9 25.00 365 390
PPR_1 PPR repeat 0.055 3 23.80 365 384
TPR_10 Tetratricopeptide repeat 0.034 4 27.50 365 384
TPR_7 Tetratricopeptide repeat 0.096 3 27.90 366 386
PPR_3 Pentatricopeptide repeat domain 2.5E-05 14 25.00 388 437
PPR_2 PPR repeat family 2.3E-12 37 30.00 390 438
PPR_1 PPR repeat 0.00021 11 23.80 392 418
PPR PPR repeat 3.8E-08 23 25.00 393 421
PPR_1 PPR repeat 0.0027 7 23.80 424 453
PPR PPR repeat 1.1E-05 15 25.00 428 453
PPR_3 Pentatricopeptide repeat domain 0.022 4 25.00 463 506
PPR_2 PPR repeat family 9.9E-05 12 30.00 466 496
PPR PPR repeat 4.7E-08 23 25.00 467 492
PPR_1 PPR repeat 7.8E-07 18 23.80 467 491
TPR_14 Tetratricopeptide repeat 0.13 3 23.50 469 491
TPR_7 Tetratricopeptide repeat 0.12 2 27.90 472 489
TPR_10 Tetratricopeptide repeat 0.13 2 27.50 473 489
TPR_14 Tetratricopeptide repeat 0.084 4 23.50 498 536
TPR_16 Tetratricopeptide repeat 0.054 4 32.70 510 546
TPR_19 Tetratricopeptide repeat 0.21 2 25.00 521 546
TPR_7 Tetratricopeptide repeat 0.28 1 27.90 532 548
PPR PPR repeat 0.0006 10 25.00 533 561
PPR_2 PPR repeat family 0.027 4 30.00 538 561
PPR_3 Pentatricopeptide repeat domain 0.81 -1 25.00 538 561
DYW_deaminase DYW family of nucleic acid deaminases 0 135 31.60 565 687

697

PPR
PPR_2
TPR_19
PPR_1
PPR_1
PPR_2
PPR_3
PPR
TPR_10
PPR_2
PPR_1
PPR_3
PPR
TPR_7
TPR_19
PPR_2
PPR_3
PPR_1
PPR
TPR_7
TPR_14
TPR_10
TPR_19
PPR_2
PPR_1
TPR_14
PPR_3
PPR
TPR_7
TPR_10
TPR_16
PPR_2
PPR_1
PPR
PPR
PPR_3
PPR_2
TPR_14
PPR
PPR_1
PPR_3
PPR_2
PPR
PPR_1
TPR_10
TPR_7
PPR_3
PPR_2
PPR_1
PPR
PPR_1
PPR
PPR_3
PPR_2
PPR
PPR_1
TPR_14
TPR_7
TPR_10
TPR_14
TPR_16
TPR_19
TPR_7
PPR
PPR_2
PPR_3
DYW_deaminase

References:

TPR_7

TPR_19

DYW_deaminase

TPR_16

TPR_10

TPR_14

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR	PPR repeat	0.11	3	25.00	41	60
PPR_2	PPR repeat family	0.81	-1	30.00	41	60
TPR_19	Tetratricopeptide repeat	0.31	1	25.00	48	62
PPR_1	PPR repeat	0.12	2	23.80	50	60
PPR_1	PPR repeat	4.5E-07	19	23.80	63	92
PPR_2	PPR repeat family	5.3E-07	19	30.00	64	93
PPR_3	Pentatricopeptide repeat domain	0.1	2	25.00	65	92
PPR	PPR repeat	1.1E-07	21	25.00	68	95
TPR_10	Tetratricopeptide repeat	0.77	-1	27.50	76	91
PPR_2	PPR repeat family	1.6E-12	37	30.00	95	128
PPR_1	PPR repeat	8.2E-10	28	23.80	95	123
PPR_3	Pentatricopeptide repeat domain	0.00065	9	25.00	96	126
PPR	PPR repeat	7.4E-12	35	25.00	98	127
TPR_7	Tetratricopeptide repeat	0.47	0	27.90	107	122
TPR_19	Tetratricopeptide repeat	0.27	1	25.00	111	151
PPR_2	PPR repeat family	3.3E-08	23	30.00	127	155
PPR_3	Pentatricopeptide repeat domain	0.012	5	25.00	127	154
PPR_1	PPR repeat	1.7E-08	24	23.80	127	154
PPR	PPR repeat	1.8E-09	27	25.00	129	155
TPR_7	Tetratricopeptide repeat	0.25	1	27.90	131	151
TPR_14	Tetratricopeptide repeat	0.036	5	23.50	131	153
TPR_10	Tetratricopeptide repeat	0.99	-1	27.50	139	152
TPR_19	Tetratricopeptide repeat	0.0023	8	25.00	141	186
PPR_2	PPR repeat family	1.4E-09	28	30.00	157	189
PPR_1	PPR repeat	9.9E-08	21	23.80	158	185
TPR_14	Tetratricopeptide repeat	0.021	6	23.50	160	184
PPR_3	Pentatricopeptide repeat domain	0.016	5	25.00	161	186
PPR	PPR repeat	9.9E-11	31	25.00	161	190
TPR_7	Tetratricopeptide repeat	0.046	4	27.90	162	184
TPR_10	Tetratricopeptide repeat	0.077	3	27.50	165	184
TPR_16	Tetratricopeptide repeat	0.07	3	32.70	167	184
PPR_2	PPR repeat family	3.3E-10	30	30.00	188	237
PPR_1	PPR repeat	4.8E-05	13	23.80	189	216
PPR	PPR repeat	3.4E-06	17	25.00	191	219
PPR	PPR repeat	0.26	1	25.00	265	285
PPR_3	Pentatricopeptide repeat domain	2.9E-07	20	25.00	290	336
PPR_2	PPR repeat family	3.3E-10	30	30.00	291	336
TPR_14	Tetratricopeptide repeat	0.84	1	23.50	292	318
PPR	PPR repeat	6.8E-08	22	25.00	293	321
PPR_1	PPR repeat	0.34	0	23.80	293	317
PPR_3	Pentatricopeptide repeat domain	0.37	1	25.00	354	390
PPR_2	PPR repeat family	0.022	5	30.00	363	391
PPR	PPR repeat	0.0014	9	25.00	365	390
PPR_1	PPR repeat	0.055	3	23.80	365	384
TPR_10	Tetratricopeptide repeat	0.034	4	27.50	365	384
TPR_7	Tetratricopeptide repeat	0.096	3	27.90	366	386
PPR_3	Pentatricopeptide repeat domain	2.5E-05	14	25.00	388	437
PPR_2	PPR repeat family	2.3E-12	37	30.00	390	438
PPR_1	PPR repeat	0.00021	11	23.80	392	418
PPR	PPR repeat	3.8E-08	23	25.00	393	421
PPR_1	PPR repeat	0.0027	7	23.80	424	453
PPR	PPR repeat	1.1E-05	15	25.00	428	453
PPR_3	Pentatricopeptide repeat domain	0.022	4	25.00	463	506
PPR_2	PPR repeat family	9.9E-05	12	30.00	466	496
PPR	PPR repeat	4.7E-08	23	25.00	467	492
PPR_1	PPR repeat	7.8E-07	18	23.80	467	491
TPR_14	Tetratricopeptide repeat	0.13	3	23.50	469	491
TPR_7	Tetratricopeptide repeat	0.12	2	27.90	472	489
TPR_10	Tetratricopeptide repeat	0.13	2	27.50	473	489
TPR_14	Tetratricopeptide repeat	0.084	4	23.50	498	536
TPR_16	Tetratricopeptide repeat	0.054	4	32.70	510	546
TPR_19	Tetratricopeptide repeat	0.21	2	25.00	521	546
TPR_7	Tetratricopeptide repeat	0.28	1	27.90	532	548
PPR	PPR repeat	0.0006	10	25.00	533	561
PPR_2	PPR repeat family	0.027	4	30.00	538	561
PPR_3	Pentatricopeptide repeat domain	0.81	-1	25.00	538	561
DYW_deaminase	DYW family of nucleic acid deaminases	0	135	31.60	565	687