c2pfam

AT5G46580.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 3.4E-07 20 27.00 172 277
PPR_2 PPR repeat family 2.8E-06 17 30.00 187 230
Mtf2 Mtf2 family 0.24 1 27.00 200 225
PPR_3 Pentatricopeptide repeat domain 3.1E-12 36 25.00 211 267
PPR_1 PPR repeat 6.4E-06 16 23.80 215 247
Clathrin Region in Clathrin and VPS 0.0051 7 23.60 221 276
PPR PPR repeat 6.4E-06 16 25.00 222 249
PPR_2 PPR repeat family 3.5E-09 27 30.00 226 264
TPR_1 Tetratricopeptide repeat 0.056 3 20.40 230 246
TPR_7 Tetratricopeptide repeat 0.18 2 27.90 233 247
TPR_12 Tetratricopeptide repeat 0.0024 8 30.10 236 284
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.021 4 21.90 241 270
PPR_1 PPR repeat 1.4E-06 18 23.80 251 274
PPR_2 PPR repeat family 7.1E-10 29 30.00 254 297
PPR PPR repeat 8.6E-08 22 25.00 257 281
TPR_14 Tetratricopeptide repeat 0.0012 10 23.50 259 293
TPR_7 Tetratricopeptide repeat 0.002 8 27.90 264 283
TPR_1 Tetratricopeptide repeat 0.062 3 20.40 265 283
PPR_long Pentacotripeptide-repeat region of PRORP 4.5E-10 29 27.00 272 371
PPR_3 Pentatricopeptide repeat domain 6.3E-11 32 25.00 278 337
TPR_12 Tetratricopeptide repeat 0.81 0 30.10 291 315
Clathrin Region in Clathrin and VPS 0.041 4 23.60 291 342
PPR PPR repeat 0.0096 6 25.00 293 321
PPR_2 PPR repeat family 0.027 5 30.00 301 326
Mtf2 Mtf2 family 0.17 1 27.00 305 325
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.012 5 21.90 309 336
PPR_3 Pentatricopeptide repeat domain 4.8E-14 42 25.00 313 373
PPR_1 PPR repeat 1.6E-09 27 23.80 321 352
PPR_2 PPR repeat family 7.5E-15 45 30.00 324 369
PPR PPR repeat 4.4E-09 26 25.00 327 357
TPR_12 Tetratricopeptide repeat 0.44 1 30.10 328 354
Mtf2 Mtf2 family 0.00061 9 27.00 328 376
TPR_14 Tetratricopeptide repeat 0.099 4 23.50 331 358
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.024 4 21.90 348 376
PPR_1 PPR repeat 1.4E-05 15 23.80 356 388
Vps39_1 Vacuolar sorting protein 39 domain 1 0.013 6 21.40 360 389
PPR PPR repeat 2.6E-06 18 25.00 363 390
PPR_2 PPR repeat family 1E-05 16 30.00 365 407
PPR_long Pentacotripeptide-repeat region of PRORP 6.2E-12 35 27.00 377 535
TPR_12 Tetratricopeptide repeat 0.061 4 30.10 377 420
PPR_3 Pentatricopeptide repeat domain 9E-10 28 25.00 383 443
PPR_1 PPR repeat 1.4E-05 15 23.80 395 423
PPR_2 PPR repeat family 1.8E-12 37 30.00 397 440
PPR PPR repeat 4.9E-08 23 25.00 398 425
Vps39_1 Vacuolar sorting protein 39 domain 1 0.075 3 21.40 421 460
PPR_1 PPR repeat 1.5E-08 24 23.80 428 458
PPR_2 PPR repeat family 2.4E-10 30 30.00 430 467
PPR PPR repeat 5.6E-11 32 25.00 433 463
TPR_14 Tetratricopeptide repeat 0.12 4 23.50 438 462
TPR_1 Tetratricopeptide repeat 0.2 2 20.40 440 460
TPR_7 Tetratricopeptide repeat 0.024 5 27.90 440 461
Mtf2 Mtf2 family 0.2 1 27.00 452 466
PPR_3 Pentatricopeptide repeat domain 9.8E-07 19 25.00 454 500
PPR_2 PPR repeat family 0.00019 12 30.00 466 502
PPR PPR repeat 0.002 8 25.00 471 498
PPR_1 PPR repeat 0.42 0 23.80 471 491
PPR_3 Pentatricopeptide repeat domain 0.42 1 25.00 496 526
PPR PPR repeat 0.053 4 25.00 572 592
PPR_2 PPR repeat family 0.13 2 30.00 572 591
Vps39_1 Vacuolar sorting protein 39 domain 1 0.29 1 21.40 572 593

711

PPR_long
PPR_2
Mtf2
PPR_3
PPR_1
Clathrin
PPR
PPR_2
TPR_1
TPR_7
TPR_12
ECSIT
PPR_1
PPR_2
PPR
TPR_14
TPR_7
TPR_1
PPR_long
PPR_3
TPR_12
Clathrin
PPR
PPR_2
Mtf2
ECSIT
PPR_3
PPR_1
PPR_2
PPR
TPR_12
Mtf2
TPR_14
ECSIT
PPR_1
Vps39_1
PPR
PPR_2
PPR_long
TPR_12
PPR_3
PPR_1
PPR_2
PPR
Vps39_1
PPR_1
PPR_2
PPR
TPR_14
TPR_1
TPR_7
Mtf2
PPR_3
PPR_2
PPR
PPR_1
PPR_3
PPR
PPR_2
Vps39_1

References:

TPR_7

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

PPR_long

PPR_3

PPR_2

PPR_1

Mtf2

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	3.4E-07	20	27.00	172	277
PPR_2	PPR repeat family	2.8E-06	17	30.00	187	230
Mtf2	Mtf2 family	0.24	1	27.00	200	225
PPR_3	Pentatricopeptide repeat domain	3.1E-12	36	25.00	211	267
PPR_1	PPR repeat	6.4E-06	16	23.80	215	247
Clathrin	Region in Clathrin and VPS	0.0051	7	23.60	221	276
PPR	PPR repeat	6.4E-06	16	25.00	222	249
PPR_2	PPR repeat family	3.5E-09	27	30.00	226	264
TPR_1	Tetratricopeptide repeat	0.056	3	20.40	230	246
TPR_7	Tetratricopeptide repeat	0.18	2	27.90	233	247
TPR_12	Tetratricopeptide repeat	0.0024	8	30.10	236	284
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.021	4	21.90	241	270
PPR_1	PPR repeat	1.4E-06	18	23.80	251	274
PPR_2	PPR repeat family	7.1E-10	29	30.00	254	297
PPR	PPR repeat	8.6E-08	22	25.00	257	281
TPR_14	Tetratricopeptide repeat	0.0012	10	23.50	259	293
TPR_7	Tetratricopeptide repeat	0.002	8	27.90	264	283
TPR_1	Tetratricopeptide repeat	0.062	3	20.40	265	283
PPR_long	Pentacotripeptide-repeat region of PRORP	4.5E-10	29	27.00	272	371
PPR_3	Pentatricopeptide repeat domain	6.3E-11	32	25.00	278	337
TPR_12	Tetratricopeptide repeat	0.81	0	30.10	291	315
Clathrin	Region in Clathrin and VPS	0.041	4	23.60	291	342
PPR	PPR repeat	0.0096	6	25.00	293	321
PPR_2	PPR repeat family	0.027	5	30.00	301	326
Mtf2	Mtf2 family	0.17	1	27.00	305	325
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.012	5	21.90	309	336
PPR_3	Pentatricopeptide repeat domain	4.8E-14	42	25.00	313	373
PPR_1	PPR repeat	1.6E-09	27	23.80	321	352
PPR_2	PPR repeat family	7.5E-15	45	30.00	324	369
PPR	PPR repeat	4.4E-09	26	25.00	327	357
TPR_12	Tetratricopeptide repeat	0.44	1	30.10	328	354
Mtf2	Mtf2 family	0.00061	9	27.00	328	376
TPR_14	Tetratricopeptide repeat	0.099	4	23.50	331	358
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.024	4	21.90	348	376
PPR_1	PPR repeat	1.4E-05	15	23.80	356	388
Vps39_1	Vacuolar sorting protein 39 domain 1	0.013	6	21.40	360	389
PPR	PPR repeat	2.6E-06	18	25.00	363	390
PPR_2	PPR repeat family	1E-05	16	30.00	365	407
PPR_long	Pentacotripeptide-repeat region of PRORP	6.2E-12	35	27.00	377	535
TPR_12	Tetratricopeptide repeat	0.061	4	30.10	377	420
PPR_3	Pentatricopeptide repeat domain	9E-10	28	25.00	383	443
PPR_1	PPR repeat	1.4E-05	15	23.80	395	423
PPR_2	PPR repeat family	1.8E-12	37	30.00	397	440
PPR	PPR repeat	4.9E-08	23	25.00	398	425
Vps39_1	Vacuolar sorting protein 39 domain 1	0.075	3	21.40	421	460
PPR_1	PPR repeat	1.5E-08	24	23.80	428	458
PPR_2	PPR repeat family	2.4E-10	30	30.00	430	467
PPR	PPR repeat	5.6E-11	32	25.00	433	463
TPR_14	Tetratricopeptide repeat	0.12	4	23.50	438	462
TPR_1	Tetratricopeptide repeat	0.2	2	20.40	440	460
TPR_7	Tetratricopeptide repeat	0.024	5	27.90	440	461
Mtf2	Mtf2 family	0.2	1	27.00	452	466
PPR_3	Pentatricopeptide repeat domain	9.8E-07	19	25.00	454	500
PPR_2	PPR repeat family	0.00019	12	30.00	466	502
PPR	PPR repeat	0.002	8	25.00	471	498
PPR_1	PPR repeat	0.42	0	23.80	471	491
PPR_3	Pentatricopeptide repeat domain	0.42	1	25.00	496	526
PPR	PPR repeat	0.053	4	25.00	572	592
PPR_2	PPR repeat family	0.13	2	30.00	572	591
Vps39_1	Vacuolar sorting protein 39 domain 1	0.29	1	21.40	572	593