c2pfam

AT5G46860.1 :

Domain Description Evalue Bits GA Start End
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.2 1 30.00 28 46
Syntaxin_2 Syntaxin-like protein 9.9E-33 102 30.50 29 128
Syntaxin Syntaxin 8E-10 28 25.00 33 210
TPD52 Tumour protein D52 family 0.0014 8 25.00 52 110
Spore_III_AB Stage III sporulation protein AB (spore_III_AB) 0.98 -1 24.90 65 114
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 0.76 -1 30.00 81 89
Spc7 Spc7 kinetochore protein 4.6E-06 15 34.00 103 203
MCPsignal Methyl-accepting chemotaxis protein (MCP) signaling domain 1.9E-05 14 30.00 139 222
Spore_III_AB Stage III sporulation protein AB (spore_III_AB) 0.012 5 24.90 153 205
TPD52 Tumour protein D52 family 0.0015 8 25.00 157 194
V-SNARE Vesicle transport v-SNARE protein N-terminus 0.00013 12 21.80 174 207
Histone_HNS H-NS histone family 0.0002 12 21.60 176 244
Synaptobrevin Synaptobrevin 2E-05 14 25.00 182 266
Syntaxin_2 Syntaxin-like protein 0.046 4 30.50 182 208
SNARE SNARE domain 1.5E-18 56 30.00 212 263
V-SNARE Vesicle transport v-SNARE protein N-terminus 0.52 0 21.80 213 241
Spore_III_AB Stage III sporulation protein AB (spore_III_AB) 0.00056 10 24.90 216 264
Amnionless Amnionless 0.0004 9 30.40 218 266

268

MCPsignal
Syntaxin_2
Syntaxin
TPD52
Spore_III_AB
MCPsignal
Spc7
MCPsignal
Spore_III_AB
TPD52
V-SNARE
Histone_HNS
Synaptobrevin
Syntaxin_2
SNARE
V-SNARE
Spore_III_AB
Amnionless

References:

Spore_III_AB

Amnionless

Histone_HNS
7875316 Solution structure of the DNA binding domain of a nucleoid-associated protein, H-NS, from Escherichia coli. FEBS Lett 1995;360:125-131.

Syntaxin
11839791 Characterization of temperature-sensitive mutations in the yeast syntaxin 1 homologues Sso1p and Sso2p, and evidence of a distinct function for Sso1p in sporulation. J Cell Sci 2002;115:409-420.
11157748 t-SNARE dephosphorylation promotes SNARE assembly and exocytosis in yeast. EMBO J 2001;20:411-421.
11224573 Vam3p structure reveals conserved and divergent properties of syntaxins. Nat Struct Biol 2001;8:258-264.
11224554 The taming of the SNARE. Nat Struct Biol 2001;8:186-188.
12072456 Gene overexpression as a tool for identifying new trans-acting factors involved in translation termination in Saccharomyces cerevisiae. Genetics 2002;161:585-594.
11737951 The syntaxins. Genome Biol 2001;2:REVIEWS3012.

Syntaxin_2

TPD52
9484778 Identification of homo- and heteromeric interactions between members of the breast carcinoma-associated D52 protein family using the yeast two-hybrid system. Oncogene. 1998;16:873-881.

SNARE
9096343 A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. Proc Natl Acad Sci U S A 1997;94:3046-3051.

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

MCPsignal
1601874 Sequence and characterization of Bacillus subtilis CheW. J Biol Chem 1992;267:12055-12060.

V-SNARE
10359592 The Saccharomyces cerevisiae v-SNARE Vti1p is required for multiple membrane transport pathways to the vacuole. Mol Biol Cell 1999;10:1719-1732.

Synaptobrevin

Domain	Description	Evalue	Bits	GA	Start	End
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.2	1	30.00	28	46
Syntaxin_2	Syntaxin-like protein	9.9E-33	102	30.50	29	128
Syntaxin	Syntaxin	8E-10	28	25.00	33	210
TPD52	Tumour protein D52 family	0.0014	8	25.00	52	110
Spore_III_AB	Stage III sporulation protein AB (spore_III_AB)	0.98	-1	24.90	65	114
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	0.76	-1	30.00	81	89
Spc7	Spc7 kinetochore protein	4.6E-06	15	34.00	103	203
MCPsignal	Methyl-accepting chemotaxis protein (MCP) signaling domain	1.9E-05	14	30.00	139	222
Spore_III_AB	Stage III sporulation protein AB (spore_III_AB)	0.012	5	24.90	153	205
TPD52	Tumour protein D52 family	0.0015	8	25.00	157	194
V-SNARE	Vesicle transport v-SNARE protein N-terminus	0.00013	12	21.80	174	207
Histone_HNS	H-NS histone family	0.0002	12	21.60	176	244
Synaptobrevin	Synaptobrevin	2E-05	14	25.00	182	266
Syntaxin_2	Syntaxin-like protein	0.046	4	30.50	182	208
SNARE	SNARE domain	1.5E-18	56	30.00	212	263
V-SNARE	Vesicle transport v-SNARE protein N-terminus	0.52	0	21.80	213	241
Spore_III_AB	Stage III sporulation protein AB (spore_III_AB)	0.00056	10	24.90	216	264
Amnionless	Amnionless	0.0004	9	30.40	218	266