c2pfam

AT5G47010.1 :

Domain Description Evalue Bits GA Start End
UPF1_Zn_bind RNA helicase (UPF2 interacting domain) 0 247 25.00 138 291
DUF5599 Domain of unknown function (DUF5599) 2.1E-33 105 25.80 343 432
AAA_30 AAA domain 9E-17 52 27.00 488 689
UvrD-helicase UvrD/REP helicase 4E-06 17 20.30 489 597
AAA_11 AAA domain 1.7E-26 84 27.00 489 609
ResIII Type III restriction enzyme, res subunit 1E-08 26 20.90 489 584
PhoH PhoH-like protein 2.9E-06 17 20.10 490 545
DEAD DEAD/DEAH box helicase 1.3E-05 16 20.60 492 558
AAA_19 AAA domain 3.3E-13 41 25.10 493 686
ATPase KaiC 1.1E-05 15 26.60 499 565
AAA_16 AAA ATPase domain 0.00045 11 32.60 499 554
AAA_10 AAA-like domain 0.00019 11 27.50 500 568
AAA_22 AAA domain 0.00045 11 27.00 503 552
PIF1 PIF1-like helicase 0.0088 6 28.50 505 548
DUF2075 Uncharacterized conserved protein (DUF2075) 2.7E-06 17 20.30 505 577
SRP54 SRP54-type protein, GTPase domain 1.6E-05 15 20.50 506 565
AAA ATPase family associated with various cellular activities (AAA) 0.00026 12 20.80 507 527
Helicase_RecD Helicase 4.7E-07 20 22.70 508 572
AAA_11 AAA domain 2.2E-31 100 27.00 591 691
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.019 5 20.90 644 687
UvrD-helicase UvrD/REP helicase 0.65 0 20.30 645 685
PIF1 PIF1-like helicase 0.0067 6 28.50 671 698
AAA_12 AAA domain 0 199 27.00 701 896
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.00032 11 20.90 782 893
Ribosomal_S13_N Ribosomal S13/S15 N-terminal domain 0.00011 13 25.00 788 813
DUF2075 Uncharacterized conserved protein (DUF2075) 0.93 -1 20.30 819 844
DUF2075 Uncharacterized conserved protein (DUF2075) 0.085 2 20.30 878 892

1254

UPF1_Zn_bind
DUF5599
AAA_30
UvrD-helicase
AAA_11
ResIII
PhoH
DEAD
AAA_19
ATPase
AAA_16
AAA_10
AAA_22
PIF1
DUF2075
SRP54
AAA
Helicase_RecD
AAA_11
Viral_helicase1
UvrD-helicase
PIF1
AAA_12
Viral_helicase1
Ribosomal_S13_N
DUF2075
DUF2075

References:

AAA_16

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

AAA_12

AAA_11

AAA_10

DUF2075

Ribosomal_S13_N
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

PIF1

UvrD-helicase
9288744 Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP. Cell 1997;90:635-647.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

UPF1_Zn_bind
16931876 Crystal structure of the UPF2-interacting domain of nonsense-mediated mRNA decay factor UPF1. RNA. 2006;12:1817-1824.

DUF5599

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

ATPase

AAA_30

Helicase_RecD

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

AAA_19

ResIII

Domain	Description	Evalue	Bits	GA	Start	End
UPF1_Zn_bind	RNA helicase (UPF2 interacting domain)	0	247	25.00	138	291
DUF5599	Domain of unknown function (DUF5599)	2.1E-33	105	25.80	343	432
AAA_30	AAA domain	9E-17	52	27.00	488	689
UvrD-helicase	UvrD/REP helicase	4E-06	17	20.30	489	597
AAA_11	AAA domain	1.7E-26	84	27.00	489	609
ResIII	Type III restriction enzyme, res subunit	1E-08	26	20.90	489	584
PhoH	PhoH-like protein	2.9E-06	17	20.10	490	545
DEAD	DEAD/DEAH box helicase	1.3E-05	16	20.60	492	558
AAA_19	AAA domain	3.3E-13	41	25.10	493	686
ATPase	KaiC	1.1E-05	15	26.60	499	565
AAA_16	AAA ATPase domain	0.00045	11	32.60	499	554
AAA_10	AAA-like domain	0.00019	11	27.50	500	568
AAA_22	AAA domain	0.00045	11	27.00	503	552
PIF1	PIF1-like helicase	0.0088	6	28.50	505	548
DUF2075	Uncharacterized conserved protein (DUF2075)	2.7E-06	17	20.30	505	577
SRP54	SRP54-type protein, GTPase domain	1.6E-05	15	20.50	506	565
AAA	ATPase family associated with various cellular activities (AAA)	0.00026	12	20.80	507	527
Helicase_RecD	Helicase	4.7E-07	20	22.70	508	572
AAA_11	AAA domain	2.2E-31	100	27.00	591	691
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.019	5	20.90	644	687
UvrD-helicase	UvrD/REP helicase	0.65	0	20.30	645	685
PIF1	PIF1-like helicase	0.0067	6	28.50	671	698
AAA_12	AAA domain	0	199	27.00	701	896
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.00032	11	20.90	782	893
Ribosomal_S13_N	Ribosomal S13/S15 N-terminal domain	0.00011	13	25.00	788	813
DUF2075	Uncharacterized conserved protein (DUF2075)	0.93	-1	20.30	819	844
DUF2075	Uncharacterized conserved protein (DUF2075)	0.085	2	20.30	878	892