c2pfam

AT5G47200.1 :

Domain Description Evalue Bits GA Start End
Arf ADP-ribosylation factor family 4.1E-19 59 20.30 9 134
Septin Septin 0.00012 12 20.00 9 66
TniB Bacterial TniB protein 0.00024 11 20.10 10 32
Ras Ras family 0 217 20.80 10 170
Roc Ras of Complex, Roc, domain of DAPkinase 5.6E-38 120 27.00 10 124
Gtr1_RagA Gtr1/RagA G protein conserved region 7.3E-07 19 20.10 10 74
AAA ATPase family associated with various cellular activities (AAA) 0.0011 10 20.80 11 120
SRPRB Signal recognition particle receptor beta subunit 3.1E-07 20 20.50 11 130
MMR_HSR1 GTPase of unknown function 9.3E-07 19 24.50 11 113
AAA_5 AAA domain (dynein-related subfamily) 0.00051 10 20.80 11 29
FeoB_N Ferrous iron transport protein B 5.5E-05 13 21.20 11 161
AAA_16 AAA ATPase domain 1.6E-05 16 32.60 11 127
AAA_29 P-loop containing region of AAA domain 0.00011 12 27.00 11 25
AAA_22 AAA domain 0.00013 13 27.00 11 32
ABC_tran ABC transporter 0.00057 11 23.10 11 34
RsgA_GTPase RsgA GTPase 0.00013 12 30.00 12 31
GTP_EFTU Elongation factor Tu GTP binding domain 4.1E-06 17 20.20 43 163
AAA_5 AAA domain (dynein-related subfamily) 1 0 20.80 104 117
RsgA_GTPase RsgA GTPase 3.7E-05 14 30.00 109 162
AAA ATPase family associated with various cellular activities (AAA) 0.0031 8 20.80 133 163

202

Arf
Septin
TniB
Ras
Roc
Gtr1_RagA
AAA
SRPRB
MMR_HSR1
AAA_5
FeoB_N
AAA_16
AAA_29
AAA_22
ABC_tran
RsgA_GTPase
GTP_EFTU
AAA_5
RsgA_GTPase
AAA

References:

SRPRB
7844142 The beta subunit of the signal recognition particle receptor is a transmembrane GTPase that anchors the alpha subunit, a peripheral membrane GTPase, to the endoplasmic reticulum membrane. J Cell Biol. 1995;128:273-282.

AAA_16

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Septin
12665577 Molecular dissection of a yeast septin: distinct domains are required for septin interaction, localization, and function. Mol Cell Biol 2003;23:2762-2777.
14611653 The septins. Genome Biol 2003;4:236.

RsgA_GTPase

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

AAA_29

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

Roc

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

Domain	Description	Evalue	Bits	GA	Start	End
Arf	ADP-ribosylation factor family	4.1E-19	59	20.30	9	134
Septin	Septin	0.00012	12	20.00	9	66
TniB	Bacterial TniB protein	0.00024	11	20.10	10	32
Ras	Ras family	0	217	20.80	10	170
Roc	Ras of Complex, Roc, domain of DAPkinase	5.6E-38	120	27.00	10	124
Gtr1_RagA	Gtr1/RagA G protein conserved region	7.3E-07	19	20.10	10	74
AAA	ATPase family associated with various cellular activities (AAA)	0.0011	10	20.80	11	120
SRPRB	Signal recognition particle receptor beta subunit	3.1E-07	20	20.50	11	130
MMR_HSR1	GTPase of unknown function	9.3E-07	19	24.50	11	113
AAA_5	AAA domain (dynein-related subfamily)	0.00051	10	20.80	11	29
FeoB_N	Ferrous iron transport protein B	5.5E-05	13	21.20	11	161
AAA_16	AAA ATPase domain	1.6E-05	16	32.60	11	127
AAA_29	P-loop containing region of AAA domain	0.00011	12	27.00	11	25
AAA_22	AAA domain	0.00013	13	27.00	11	32
ABC_tran	ABC transporter	0.00057	11	23.10	11	34
RsgA_GTPase	RsgA GTPase	0.00013	12	30.00	12	31
GTP_EFTU	Elongation factor Tu GTP binding domain	4.1E-06	17	20.20	43	163
AAA_5	AAA domain (dynein-related subfamily)	1	0	20.80	104	117
RsgA_GTPase	RsgA GTPase	3.7E-05	14	30.00	109	162
AAA	ATPase family associated with various cellular activities (AAA)	0.0031	8	20.80	133	163