c2pfam

AT5G47250.1 :

Domain Description Evalue Bits GA Start End
NACHT NACHT domain 0.32 0 20.40 23 139
DUF87 Domain of unknown function DUF87 0.076 2 20.90 69 142
NB-ARC NB-ARC domain 0 194 23.50 161 398
AAA_16 AAA ATPase domain 4E-05 14 32.60 163 200
ATPase_2 ATPase domain predominantly from Archaea 1.9E-05 14 33.20 168 240
AAA_30 AAA domain 4.4E-05 13 27.00 169 229
ABC_tran ABC transporter 8.4E-05 13 23.10 175 200
DUF87 Domain of unknown function DUF87 0.00011 12 20.90 177 211
NACHT NACHT domain 6.5E-05 12 20.40 181 269
LRR_8 Leucine rich repeat 0.21 1 27.00 391 409
LRR_8 Leucine rich repeat 0.83 -1 27.00 511 527
LRR_4 Leucine Rich repeats (2 copies) 1.8E-05 15 27.00 511 549
LRR_8 Leucine rich repeat 1.4E-12 37 27.00 535 594
LRR_4 Leucine Rich repeats (2 copies) 2.2E-06 18 27.00 560 597
LRR_1 Leucine Rich Repeat 0.035 5 20.60 560 578
LRR_1 Leucine Rich Repeat 0.21 2 20.60 583 598
LRR_8 Leucine rich repeat 0.0075 6 27.00 594 633
LRR_4 Leucine Rich repeats (2 copies) 0.0067 7 27.00 606 635
LRR_1 Leucine Rich Repeat 0.2 2 20.60 606 624
LRR_4 Leucine Rich repeats (2 copies) 0.4 1 27.00 698 715
LRR_4 Leucine Rich repeats (2 copies) 0.75 0 27.00 755 776
LRR_4 Leucine Rich repeats (2 copies) 0.23 2 27.00 800 832
LRR_1 Leucine Rich Repeat 0.31 2 20.60 826 839

843

NACHT
DUF87
NB-ARC
AAA_16
ATPase_2
AAA_30
ABC_tran
DUF87
NACHT
LRR_8
LRR_8
LRR_4
LRR_8
LRR_4
LRR_1
LRR_1
LRR_8
LRR_4
LRR_1
LRR_4
LRR_4
LRR_4
LRR_1

References:

AAA_16

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_30

ATPase_2

DUF87

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRR_8

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

LRR_4

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

Domain	Description	Evalue	Bits	GA	Start	End
NACHT	NACHT domain	0.32	0	20.40	23	139
DUF87	Domain of unknown function DUF87	0.076	2	20.90	69	142
NB-ARC	NB-ARC domain	0	194	23.50	161	398
AAA_16	AAA ATPase domain	4E-05	14	32.60	163	200
ATPase_2	ATPase domain predominantly from Archaea	1.9E-05	14	33.20	168	240
AAA_30	AAA domain	4.4E-05	13	27.00	169	229
ABC_tran	ABC transporter	8.4E-05	13	23.10	175	200
DUF87	Domain of unknown function DUF87	0.00011	12	20.90	177	211
NACHT	NACHT domain	6.5E-05	12	20.40	181	269
LRR_8	Leucine rich repeat	0.21	1	27.00	391	409
LRR_8	Leucine rich repeat	0.83	-1	27.00	511	527
LRR_4	Leucine Rich repeats (2 copies)	1.8E-05	15	27.00	511	549
LRR_8	Leucine rich repeat	1.4E-12	37	27.00	535	594
LRR_4	Leucine Rich repeats (2 copies)	2.2E-06	18	27.00	560	597
LRR_1	Leucine Rich Repeat	0.035	5	20.60	560	578
LRR_1	Leucine Rich Repeat	0.21	2	20.60	583	598
LRR_8	Leucine rich repeat	0.0075	6	27.00	594	633
LRR_4	Leucine Rich repeats (2 copies)	0.0067	7	27.00	606	635
LRR_1	Leucine Rich Repeat	0.2	2	20.60	606	624
LRR_4	Leucine Rich repeats (2 copies)	0.4	1	27.00	698	715
LRR_4	Leucine Rich repeats (2 copies)	0.75	0	27.00	755	776
LRR_4	Leucine Rich repeats (2 copies)	0.23	2	27.00	800	832
LRR_1	Leucine Rich Repeat	0.31	2	20.60	826	839