c2pfam

AT5G47360.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.33 0 25.00 95 140
PPR_long Pentacotripeptide-repeat region of PRORP 1.1E-14 43 27.00 121 261
PPR_2 PPR repeat family 0.15 1 30.00 123 140
PPR PPR repeat 0.026 4 25.00 135 160
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.00018 10 21.90 151 176
PPR_3 Pentatricopeptide repeat domain 3.6E-08 23 25.00 154 210
PPR_1 PPR repeat 0.00048 9 23.80 160 191
PPR_2 PPR repeat family 1.6E-16 49 30.00 164 212
PPR PPR repeat 1.6E-05 14 25.00 166 193
PPR_3 Pentatricopeptide repeat domain 5.8E-11 31 25.00 187 242
PPR_1 PPR repeat 1E-16 49 23.80 195 227
PPR_2 PPR repeat family 1.9E-19 59 30.00 198 247
PPR PPR repeat 2.4E-11 32 25.00 201 231
PPR_3 Pentatricopeptide repeat domain 3.1E-07 19 25.00 221 264
PPR_1 PPR repeat 4.8E-11 31 23.80 230 262
PPR_2 PPR repeat family 1.3E-08 24 30.00 234 264
PPR PPR repeat 1.9E-08 23 25.00 236 264
PPR_long Pentacotripeptide-repeat region of PRORP 7.6E-08 21 27.00 236 308
TPR_19 Tetratricopeptide repeat 0.00066 9 25.00 248 301
PPR_3 Pentatricopeptide repeat domain 2.4E-08 23 25.00 270 316
PPR_1 PPR repeat 2.2E-11 32 23.80 270 300
PPR_2 PPR repeat family 3.3E-16 48 30.00 272 319
PPR PPR repeat 9E-10 28 25.00 275 305
ECSIT Evolutionarily conserved signalling intermediate in Toll pathway 0.0022 6 21.90 293 317
PPR_1 PPR repeat 0.063 2 23.80 303 311
PPR_long Pentacotripeptide-repeat region of PRORP 0.00011 11 27.00 349 469
TPR_19 Tetratricopeptide repeat 0.36 0 25.00 355 368
PPR_2 PPR repeat family 4.9E-06 16 30.00 355 391
PPR PPR repeat 3.8E-05 13 25.00 355 376
PPR_1 PPR repeat 0.088 2 23.80 360 371
PPR_3 Pentatricopeptide repeat domain 0.043 3 25.00 366 416
PPR PPR repeat 0.33 1 25.00 390 410
PPR PPR repeat 0.0022 7 25.00 423 446
PPR_2 PPR repeat family 0.0046 6 30.00 423 447
PPR_1 PPR repeat 0.002 7 23.80 426 443
PPR_3 Pentatricopeptide repeat domain 0.12 2 25.00 441 472

477

PPR_3
PPR_long
PPR_2
PPR
ECSIT
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
TPR_19
PPR_3
PPR_1
PPR_2
PPR
ECSIT
PPR_1
PPR_long
TPR_19
PPR_2
PPR
PPR_1
PPR_3
PPR
PPR
PPR_2
PPR_1
PPR_3

References:

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.33	0	25.00	95	140
PPR_long	Pentacotripeptide-repeat region of PRORP	1.1E-14	43	27.00	121	261
PPR_2	PPR repeat family	0.15	1	30.00	123	140
PPR	PPR repeat	0.026	4	25.00	135	160
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.00018	10	21.90	151	176
PPR_3	Pentatricopeptide repeat domain	3.6E-08	23	25.00	154	210
PPR_1	PPR repeat	0.00048	9	23.80	160	191
PPR_2	PPR repeat family	1.6E-16	49	30.00	164	212
PPR	PPR repeat	1.6E-05	14	25.00	166	193
PPR_3	Pentatricopeptide repeat domain	5.8E-11	31	25.00	187	242
PPR_1	PPR repeat	1E-16	49	23.80	195	227
PPR_2	PPR repeat family	1.9E-19	59	30.00	198	247
PPR	PPR repeat	2.4E-11	32	25.00	201	231
PPR_3	Pentatricopeptide repeat domain	3.1E-07	19	25.00	221	264
PPR_1	PPR repeat	4.8E-11	31	23.80	230	262
PPR_2	PPR repeat family	1.3E-08	24	30.00	234	264
PPR	PPR repeat	1.9E-08	23	25.00	236	264
PPR_long	Pentacotripeptide-repeat region of PRORP	7.6E-08	21	27.00	236	308
TPR_19	Tetratricopeptide repeat	0.00066	9	25.00	248	301
PPR_3	Pentatricopeptide repeat domain	2.4E-08	23	25.00	270	316
PPR_1	PPR repeat	2.2E-11	32	23.80	270	300
PPR_2	PPR repeat family	3.3E-16	48	30.00	272	319
PPR	PPR repeat	9E-10	28	25.00	275	305
ECSIT	Evolutionarily conserved signalling intermediate in Toll pathway	0.0022	6	21.90	293	317
PPR_1	PPR repeat	0.063	2	23.80	303	311
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00011	11	27.00	349	469
TPR_19	Tetratricopeptide repeat	0.36	0	25.00	355	368
PPR_2	PPR repeat family	4.9E-06	16	30.00	355	391
PPR	PPR repeat	3.8E-05	13	25.00	355	376
PPR_1	PPR repeat	0.088	2	23.80	360	371
PPR_3	Pentatricopeptide repeat domain	0.043	3	25.00	366	416
PPR	PPR repeat	0.33	1	25.00	390	410
PPR	PPR repeat	0.0022	7	25.00	423	446
PPR_2	PPR repeat family	0.0046	6	30.00	423	447
PPR_1	PPR repeat	0.002	7	23.80	426	443
PPR_3	Pentatricopeptide repeat domain	0.12	2	25.00	441	472