c2pfam

AT5G48600.1 :

Domain Description Evalue Bits GA Start End
SMC_N RecF/RecN/SMC N terminal domain 0 204 40.00 25 1224
AAA_15 AAA ATPase domain 5.3E-08 23 32.10 25 402
AAA_29 P-loop containing region of AAA domain 3.6E-09 26 27.00 28 85
AAA_22 AAA domain 0.0049 7 27.00 47 69
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 9.6E-09 25 27.00 50 73
ABC_tran ABC transporter 0.00015 12 23.10 51 82
DHR10 Designed helical repeat protein 10 domain 0.7 0 28.40 206 250
Spc7 Spc7 kinetochore protein 5.9E-05 12 34.00 210 338
Crescentin Crescentin protein 1.3E-05 14 100.00 212 428
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.27 2 28.80 226 309
EzrA Septation ring formation regulator, EzrA 0.0021 6 30.00 296 405
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.39 0 27.00 303 410
Ubiq_cyt_C_chap Ubiquinol-cytochrome C chaperone 0.43 1 20.40 312 351
Spc7 Spc7 kinetochore protein 0.0012 8 34.00 316 424
Spc7 Spc7 kinetochore protein 0.00037 9 34.00 348 469
DHR10 Designed helical repeat protein 10 domain 0.11 3 28.40 351 423
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.074 4 28.80 398 453
DHR10 Designed helical repeat protein 10 domain 0.26 1 28.40 423 483
EzrA Septation ring formation regulator, EzrA 0.029 2 30.00 456 537
SMC_hinge SMC proteins Flexible Hinge Domain 1.1E-24 77 21.60 555 671
DHR10 Designed helical repeat protein 10 domain 5.3E-06 17 28.40 711 788
Spc7 Spc7 kinetochore protein 0.00017 10 34.00 719 811
EzrA Septation ring formation regulator, EzrA 0.0053 5 30.00 720 774
Crescentin Crescentin protein 9E-05 12 100.00 733 830
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 0.063 4 28.80 743 782
DUF465 Protein of unknown function (DUF465) 0.00036 11 20.90 771 805
DHR10 Designed helical repeat protein 10 domain 0.38 1 28.40 798 831
Crescentin Crescentin protein 0.00075 9 100.00 800 996
HIP1_clath_bdg Clathrin-binding domain of Huntingtin-interacting protein 1 2.2E-06 18 28.80 803 893
Spc7 Spc7 kinetochore protein 0.00027 10 34.00 803 895
DHR10 Designed helical repeat protein 10 domain 0.035 4 28.40 839 891
DHR10 Designed helical repeat protein 10 domain 0.28 1 28.40 872 924
Spc7 Spc7 kinetochore protein 0.00013 11 34.00 873 996
EzrA Septation ring formation regulator, EzrA 1.2E-06 17 30.00 903 1061
DHR10 Designed helical repeat protein 10 domain 0.58 0 28.40 909 974
Crescentin Crescentin protein 0.072 2 100.00 912 1050
Spc7 Spc7 kinetochore protein 0.27 0 34.00 932 1009
DUF465 Protein of unknown function (DUF465) 0.00037 11 20.90 938 966
Ubiq_cyt_C_chap Ubiquinol-cytochrome C chaperone 2.7E-05 14 20.40 960 1037
DHR10 Designed helical repeat protein 10 domain 0.048 4 28.40 1020 1080
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 1.6E-06 18 27.00 1029 1200
EzrA Septation ring formation regulator, EzrA 0.29 -1 30.00 1066 1106
AAA_22 AAA domain 0.21 2 27.00 1147 1200

1241

SMC_N
AAA_15
AAA_29
AAA_22
AAA_21
ABC_tran
DHR10
Spc7
Crescentin
HIP1_clath_bdg
EzrA
AAA_21
Ubiq_cyt_C_chap
Spc7
Spc7
DHR10
HIP1_clath_bdg
DHR10
EzrA
SMC_hinge
DHR10
Spc7
EzrA
Crescentin
HIP1_clath_bdg
DUF465
DHR10
Crescentin
HIP1_clath_bdg
Spc7
DHR10
DHR10
Spc7
EzrA
DHR10
Crescentin
Spc7
DUF465
Ubiq_cyt_C_chap
DHR10
AAA_21
EzrA
AAA_22

References:

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

SMC_hinge
12411491 Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA. EMBO J 2002;21:5733-5744.

AAA_15

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

DUF465

HIP1_clath_bdg

Crescentin

AAA_29

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DHR10

AAA_22

AAA_21

EzrA
10449747 Identification and characterization of a negative regulator of FtsZ ring formation in Bacillus subtilis. Proc Natl Acad Sci U S A 1999;96:9642-9647.

Ubiq_cyt_C_chap
2544586 Identification and characterization of a new gene (CBP3) required for the expression of yeast coenzyme QH2-cytochrome c reductase. J Biol Chem 1989;264:11122-11130.
11522252 Identification of functional regions of Cbp3p, an enzyme-specific chaperone required for the assembly of ubiquinol-cytochrome c reductase in yeast mitochondria. Biochim Biophys Acta 2001;1506:103-116.

Domain	Description	Evalue	Bits	GA	Start	End
SMC_N	RecF/RecN/SMC N terminal domain	0	204	40.00	25	1224
AAA_15	AAA ATPase domain	5.3E-08	23	32.10	25	402
AAA_29	P-loop containing region of AAA domain	3.6E-09	26	27.00	28	85
AAA_22	AAA domain	0.0049	7	27.00	47	69
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	9.6E-09	25	27.00	50	73
ABC_tran	ABC transporter	0.00015	12	23.10	51	82
DHR10	Designed helical repeat protein 10 domain	0.7	0	28.40	206	250
Spc7	Spc7 kinetochore protein	5.9E-05	12	34.00	210	338
Crescentin	Crescentin protein	1.3E-05	14	100.00	212	428
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.27	2	28.80	226	309
EzrA	Septation ring formation regulator, EzrA	0.0021	6	30.00	296	405
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.39	0	27.00	303	410
Ubiq_cyt_C_chap	Ubiquinol-cytochrome C chaperone	0.43	1	20.40	312	351
Spc7	Spc7 kinetochore protein	0.0012	8	34.00	316	424
Spc7	Spc7 kinetochore protein	0.00037	9	34.00	348	469
DHR10	Designed helical repeat protein 10 domain	0.11	3	28.40	351	423
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.074	4	28.80	398	453
DHR10	Designed helical repeat protein 10 domain	0.26	1	28.40	423	483
EzrA	Septation ring formation regulator, EzrA	0.029	2	30.00	456	537
SMC_hinge	SMC proteins Flexible Hinge Domain	1.1E-24	77	21.60	555	671
DHR10	Designed helical repeat protein 10 domain	5.3E-06	17	28.40	711	788
Spc7	Spc7 kinetochore protein	0.00017	10	34.00	719	811
EzrA	Septation ring formation regulator, EzrA	0.0053	5	30.00	720	774
Crescentin	Crescentin protein	9E-05	12	100.00	733	830
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	0.063	4	28.80	743	782
DUF465	Protein of unknown function (DUF465)	0.00036	11	20.90	771	805
DHR10	Designed helical repeat protein 10 domain	0.38	1	28.40	798	831
Crescentin	Crescentin protein	0.00075	9	100.00	800	996
HIP1_clath_bdg	Clathrin-binding domain of Huntingtin-interacting protein 1	2.2E-06	18	28.80	803	893
Spc7	Spc7 kinetochore protein	0.00027	10	34.00	803	895
DHR10	Designed helical repeat protein 10 domain	0.035	4	28.40	839	891
DHR10	Designed helical repeat protein 10 domain	0.28	1	28.40	872	924
Spc7	Spc7 kinetochore protein	0.00013	11	34.00	873	996
EzrA	Septation ring formation regulator, EzrA	1.2E-06	17	30.00	903	1061
DHR10	Designed helical repeat protein 10 domain	0.58	0	28.40	909	974
Crescentin	Crescentin protein	0.072	2	100.00	912	1050
Spc7	Spc7 kinetochore protein	0.27	0	34.00	932	1009
DUF465	Protein of unknown function (DUF465)	0.00037	11	20.90	938	966
Ubiq_cyt_C_chap	Ubiquinol-cytochrome C chaperone	2.7E-05	14	20.40	960	1037
DHR10	Designed helical repeat protein 10 domain	0.048	4	28.40	1020	1080
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	1.6E-06	18	27.00	1029	1200
EzrA	Septation ring formation regulator, EzrA	0.29	-1	30.00	1066	1106
AAA_22	AAA domain	0.21	2	27.00	1147	1200