c2pfam

AT5G48850.1 :

Domain Description Evalue Bits GA Start End
TPR_1 Tetratricopeptide repeat 0.056 4 20.40 47 64
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.68 1 27.20 56 95
SPATA24 Spermatogenesis-associated protein 24 6.5E-05 13 27.00 68 131
TPR_12 Tetratricopeptide repeat 0.044 5 30.10 70 93
TPR_2 Tetratricopeptide repeat 0.12 3 22.40 73 94
TPR_14 Tetratricopeptide repeat 0.17 4 23.50 73 95
TPR_19 Tetratricopeptide repeat 0.2 3 25.00 74 95
TPR_1 Tetratricopeptide repeat 0.44 1 20.40 74 93
TPR_20 Tetratricopeptide repeat 0.0036 8 25.00 76 136
TPR_6 Tetratricopeptide repeat 0.34 2 26.30 77 97
Syntaxin-6_N Syntaxin 6, N-terminal 0.00044 11 24.90 79 167
TPR_8 Tetratricopeptide repeat 0.21 3 25.70 82 95
CoV_NSP2_N Coronavirus replicase NSP2, N-terminal 0.031 4 28.00 93 122
SlyX SlyX 0.0011 10 30.00 107 139
PPR PPR repeat 0.00099 10 25.00 111 131
TPR_7 Tetratricopeptide repeat 0.42 1 27.90 115 134
TPR_8 Tetratricopeptide repeat 0.065 4 25.70 115 131
Rdx Rdx family 0.097 3 20.80 119 173
CoV_NSP2_N Coronavirus replicase NSP2, N-terminal 0.0061 6 28.00 143 189
TPR_12 Tetratricopeptide repeat 0.00064 10 30.10 167 193
TPR_8 Tetratricopeptide repeat 2.2E-06 18 25.70 168 199
TPR_1 Tetratricopeptide repeat 3.8E-06 17 20.40 168 199
TPR_2 Tetratricopeptide repeat 4.9E-06 17 22.40 169 199
TPR_7 Tetratricopeptide repeat 0.00074 10 27.90 170 195
TPR_10 Tetratricopeptide repeat 0.00079 10 27.50 170 193
TPR_16 Tetratricopeptide repeat 0.00013 13 32.70 172 225
TPR_6 Tetratricopeptide repeat 0.62 1 26.30 172 192
TPR_14 Tetratricopeptide repeat 0.025 6 23.50 173 199
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 5.2E-06 17 27.20 173 225
TPR_19 Tetratricopeptide repeat 2.2E-06 18 25.00 178 228
TPR_20 Tetratricopeptide repeat 0.1 3 25.00 183 228
TPR_7 Tetratricopeptide repeat 0.34 2 27.90 204 218
TPR_2 Tetratricopeptide repeat 0.00095 10 22.40 204 228
TPR_12 Tetratricopeptide repeat 0.00085 10 30.10 204 235
TPR_1 Tetratricopeptide repeat 0.0011 9 20.40 204 218
TPR_8 Tetratricopeptide repeat 0.0098 7 25.70 204 228
TPR_10 Tetratricopeptide repeat 0.099 3 27.50 205 229
TPR_6 Tetratricopeptide repeat 0.035 5 26.30 205 228
TPR_16 Tetratricopeptide repeat 0.077 4 32.70 206 230
PPR PPR repeat 0.096 4 25.00 206 228
Rdx Rdx family 0.0072 7 20.80 236 256

306

TPR_1
ANAPC3
SPATA24
TPR_12
TPR_2
TPR_14
TPR_19
TPR_1
TPR_20
TPR_6
Syntaxin-6_N
TPR_8
CoV_NSP2_N
SlyX
PPR
TPR_7
TPR_8
Rdx
CoV_NSP2_N
TPR_12
TPR_8
TPR_1
TPR_2
TPR_7
TPR_10
TPR_16
TPR_6
TPR_14
ANAPC3
TPR_19
TPR_20
TPR_7
TPR_2
TPR_12
TPR_1
TPR_8
TPR_10
TPR_6
TPR_16
PPR
Rdx

References:

TPR_7

TPR_6

TPR_20

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

Syntaxin-6_N
12082176 Three-dimensional structure of the amino-terminal domain of syntaxin 6, a SNAP-25 C homolog. Proc Natl Acad Sci U S A. 2002;99:9184-9189.

TPR_16

TPR_14

TPR_12

TPR_10

CoV_NSP2_N

ANAPC3

Rdx
11278576 Association between the 15-kDa selenoprotein and UDP-glucose:glycoprotein glucosyltransferase in the endoplasmic reticulum of mammalian cells. J Biol Chem. 2001;276:15330-15336.
17034973 Identification of novel genes expressed in hypoxic brain condition by fluorescence differential display. Forensic Sci Int. 2007;169:168-172.
12405536 Selenoprotein W gene regulation by selenium in L8 cells. Biometals 2002;15:411-420.
17503775 SelT, SelW, SelH, and Rdx12: genomics and molecular insights into the functions of selenoproteins of a novel thioredoxin-like family. Biochemistry. 2007;46:6871-6882.

SPATA24

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SlyX

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
TPR_1	Tetratricopeptide repeat	0.056	4	20.40	47	64
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.68	1	27.20	56	95
SPATA24	Spermatogenesis-associated protein 24	6.5E-05	13	27.00	68	131
TPR_12	Tetratricopeptide repeat	0.044	5	30.10	70	93
TPR_2	Tetratricopeptide repeat	0.12	3	22.40	73	94
TPR_14	Tetratricopeptide repeat	0.17	4	23.50	73	95
TPR_19	Tetratricopeptide repeat	0.2	3	25.00	74	95
TPR_1	Tetratricopeptide repeat	0.44	1	20.40	74	93
TPR_20	Tetratricopeptide repeat	0.0036	8	25.00	76	136
TPR_6	Tetratricopeptide repeat	0.34	2	26.30	77	97
Syntaxin-6_N	Syntaxin 6, N-terminal	0.00044	11	24.90	79	167
TPR_8	Tetratricopeptide repeat	0.21	3	25.70	82	95
CoV_NSP2_N	Coronavirus replicase NSP2, N-terminal	0.031	4	28.00	93	122
SlyX	SlyX	0.0011	10	30.00	107	139
PPR	PPR repeat	0.00099	10	25.00	111	131
TPR_7	Tetratricopeptide repeat	0.42	1	27.90	115	134
TPR_8	Tetratricopeptide repeat	0.065	4	25.70	115	131
Rdx	Rdx family	0.097	3	20.80	119	173
CoV_NSP2_N	Coronavirus replicase NSP2, N-terminal	0.0061	6	28.00	143	189
TPR_12	Tetratricopeptide repeat	0.00064	10	30.10	167	193
TPR_8	Tetratricopeptide repeat	2.2E-06	18	25.70	168	199
TPR_1	Tetratricopeptide repeat	3.8E-06	17	20.40	168	199
TPR_2	Tetratricopeptide repeat	4.9E-06	17	22.40	169	199
TPR_7	Tetratricopeptide repeat	0.00074	10	27.90	170	195
TPR_10	Tetratricopeptide repeat	0.00079	10	27.50	170	193
TPR_16	Tetratricopeptide repeat	0.00013	13	32.70	172	225
TPR_6	Tetratricopeptide repeat	0.62	1	26.30	172	192
TPR_14	Tetratricopeptide repeat	0.025	6	23.50	173	199
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	5.2E-06	17	27.20	173	225
TPR_19	Tetratricopeptide repeat	2.2E-06	18	25.00	178	228
TPR_20	Tetratricopeptide repeat	0.1	3	25.00	183	228
TPR_7	Tetratricopeptide repeat	0.34	2	27.90	204	218
TPR_2	Tetratricopeptide repeat	0.00095	10	22.40	204	228
TPR_12	Tetratricopeptide repeat	0.00085	10	30.10	204	235
TPR_1	Tetratricopeptide repeat	0.0011	9	20.40	204	218
TPR_8	Tetratricopeptide repeat	0.0098	7	25.70	204	228
TPR_10	Tetratricopeptide repeat	0.099	3	27.50	205	229
TPR_6	Tetratricopeptide repeat	0.035	5	26.30	205	228
TPR_16	Tetratricopeptide repeat	0.077	4	32.70	206	230
PPR	PPR repeat	0.096	4	25.00	206	228
Rdx	Rdx family	0.0072	7	20.80	236	256