c2pfam

AT5G49200.1 :

Domain Description Evalue Bits GA Start End
Torus Torus domain 3.5E-06 18 29.00 86 114
zf-CCCH_4 CCCH-type zinc finger 2.4E-07 20 24.60 94 113
zf_CCCH_4 Zinc finger domain 2.7E-09 27 29.00 95 113
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 9.4E-09 25 20.50 95 114
zf-CCCH_2 RNA-binding, Nab2-type zinc finger 3.8E-06 17 25.80 95 113
Nucleoporin_N Nup133 N terminal like 0.0047 6 23.70 105 163
WD40 WD domain, G-beta repeat 2.9E-05 15 21.00 124 159
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.002 8 22.90 130 174
PQQ_2 PQQ-like domain 0.00094 9 27.60 137 238
Nup160 Nucleoporin Nup120/160 1.2E-08 24 19.20 142 174
WD40_like WD40-like domain 0.68 -1 40.00 144 173
WD40_like WD40-like domain 0.29 0 40.00 211 238
PQQ_3 PQQ-like domain 0.0023 9 22.00 214 241
WD40_2 WD40 repeated domain 1.2E-05 14 22.50 218 344
Nucleoporin_N Nup133 N terminal like 0.43 -1 23.70 219 244
WD40 WD domain, G-beta repeat 0.31 2 21.00 222 238
WD40 WD domain, G-beta repeat 4.9E-09 27 21.00 249 284
PQQ_3 PQQ-like domain 0.04 5 22.00 254 287
Nucleoporin_N Nup133 N terminal like 0.031 3 23.70 260 296
Nup160 Nucleoporin Nup120/160 1.7E-06 17 19.20 260 295
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0031 8 22.90 262 308
WD40_like WD40-like domain 0.0019 7 40.00 267 339
BBS2_Mid Ciliary BBSome complex subunit 2, middle region 0.19 2 27.00 268 324
WD40_2 WD40 repeated domain 0.0029 6 22.50 286 339
WD40 WD domain, G-beta repeat 1.5E-06 19 21.00 289 323
BBS2_Mid Ciliary BBSome complex subunit 2, middle region 0.00086 9 27.00 310 372
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.47 1 22.90 330 373
PQQ_2 PQQ-like domain 0.12 2 27.60 346 417
Nucleoporin_N Nup133 N terminal like 0.0051 5 23.70 378 416
WD40 WD domain, G-beta repeat 0.023 6 21.00 381 411

419

Torus
zf-CCCH_4
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Nucleoporin_N
WD40
ANAPC4_WD40
PQQ_2
Nup160
WD40_like
WD40_like
PQQ_3
WD40_2
Nucleoporin_N
WD40
WD40
PQQ_3
Nucleoporin_N
Nup160
ANAPC4_WD40
WD40_like
BBS2_Mid
WD40_2
WD40
BBS2_Mid
ANAPC4_WD40
PQQ_2
Nucleoporin_N
WD40

References:

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

PQQ_2

PQQ_3

ANAPC4_WD40

WD40_like

BBS2_Mid

Torus

Nucleoporin_N
15557116 Structural and functional analysis of Nup133 domains reveals modular building blocks of the nuclear pore complex. J Cell Biol. 2004;167:591-597.

zf-CCCH_4

WD40_2

zf-CCCH_2

zf-CCCH

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

zf_CCCH_4

Domain	Description	Evalue	Bits	GA	Start	End
Torus	Torus domain	3.5E-06	18	29.00	86	114
zf-CCCH_4	CCCH-type zinc finger	2.4E-07	20	24.60	94	113
zf_CCCH_4	Zinc finger domain	2.7E-09	27	29.00	95	113
zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	9.4E-09	25	20.50	95	114
zf-CCCH_2	RNA-binding, Nab2-type zinc finger	3.8E-06	17	25.80	95	113
Nucleoporin_N	Nup133 N terminal like	0.0047	6	23.70	105	163
WD40	WD domain, G-beta repeat	2.9E-05	15	21.00	124	159
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.002	8	22.90	130	174
PQQ_2	PQQ-like domain	0.00094	9	27.60	137	238
Nup160	Nucleoporin Nup120/160	1.2E-08	24	19.20	142	174
WD40_like	WD40-like domain	0.68	-1	40.00	144	173
WD40_like	WD40-like domain	0.29	0	40.00	211	238
PQQ_3	PQQ-like domain	0.0023	9	22.00	214	241
WD40_2	WD40 repeated domain	1.2E-05	14	22.50	218	344
Nucleoporin_N	Nup133 N terminal like	0.43	-1	23.70	219	244
WD40	WD domain, G-beta repeat	0.31	2	21.00	222	238
WD40	WD domain, G-beta repeat	4.9E-09	27	21.00	249	284
PQQ_3	PQQ-like domain	0.04	5	22.00	254	287
Nucleoporin_N	Nup133 N terminal like	0.031	3	23.70	260	296
Nup160	Nucleoporin Nup120/160	1.7E-06	17	19.20	260	295
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0031	8	22.90	262	308
WD40_like	WD40-like domain	0.0019	7	40.00	267	339
BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	0.19	2	27.00	268	324
WD40_2	WD40 repeated domain	0.0029	6	22.50	286	339
WD40	WD domain, G-beta repeat	1.5E-06	19	21.00	289	323
BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	0.00086	9	27.00	310	372
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.47	1	22.90	330	373
PQQ_2	PQQ-like domain	0.12	2	27.60	346	417
Nucleoporin_N	Nup133 N terminal like	0.0051	5	23.70	378	416
WD40	WD domain, G-beta repeat	0.023	6	21.00	381	411