c2pfam

AT5G49840.1 :

Domain Description Evalue Bits GA Start End
Ogr_Delta Ogr/Delta-like zinc finger 0.00073 10 20.80 82 111
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.43 1 20.00 207 231
Mg_chelatase Magnesium chelatase, subunit ChlI 0.37 1 20.30 210 226
Sigma54_activat Sigma-54 interaction domain 3.2E-07 21 20.20 253 342
Sigma54_activ_2 Sigma-54 interaction domain 3.9E-06 18 25.00 253 341
AAA_29 P-loop containing region of AAA domain 0.00032 11 27.00 257 276
T2SSE Type II/IV secretion system protein 5.8E-05 13 24.90 258 287
AAA_8 P-loop containing dynein motor region D4 0.00033 11 25.60 259 311
IstB_IS21 IstB-like ATP binding protein 1.8E-05 15 24.10 261 283
MCM MCM2/3/5 family 8.3E-09 25 25.20 261 344
AAA_2 AAA domain (Cdc48 subfamily) 0 139 20.60 262 467
AAA_22 AAA domain 4.5E-06 18 27.00 262 313
AAA_7 P-loop containing dynein motor region 4.1E-05 14 25.80 262 314
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00012 13 26.60 262 293
TIP49 TIP49 C-terminus 0.00079 9 23.80 263 298
ABC_tran ABC transporter 4.2E-05 15 23.10 263 287
AAA_16 AAA ATPase domain 2E-05 16 32.60 263 287
RuvB_N Holliday junction DNA helicase ruvB N-terminus 8E-06 16 20.00 263 335
Mg_chelatase Magnesium chelatase, subunit ChlI 4.5E-06 17 20.30 263 287
AAA_5 AAA domain (dynein-related subfamily) 2.3E-09 28 20.80 264 340
AAA_14 AAA domain 0.00011 13 27.00 264 340
AAA_18 AAA domain 0.0001 13 29.40 265 319
NACHT NACHT domain 0.00041 11 20.40 265 284
AAA ATPase family associated with various cellular activities (AAA) 2.7E-16 51 20.80 265 369
Mg_chelatase Magnesium chelatase, subunit ChlI 0.6 0 20.30 322 340
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 1.3E-16 51 21.40 474 545

608

Ogr_Delta
RuvB_N
Mg_chelatase
Sigma54_activat
Sigma54_activ_2
AAA_29
T2SSE
AAA_8
IstB_IS21
MCM
AAA_2
AAA_22
AAA_7
TsaE
TIP49
ABC_tran
AAA_16
RuvB_N
Mg_chelatase
AAA_5
AAA_14
AAA_18
NACHT
AAA
Mg_chelatase
ClpB_D2-small

References:

IstB_IS21

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

TsaE

T2SSE

ClpB_D2-small
14567920 The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell. 2003;115:229-240.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_8

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_22

AAA_29

Sigma54_activ_2

AAA_18

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Ogr_Delta
1597424 Escherichia coli K-12 and B contain functional bacteriophage P2 ogr genes. J Bacteriol 1992;174:4094-4100.
9143285 The two P2 Ogr-like domains of the delta protein from bacteriophage P4 are required for activity. Virology 1997;230:292-299.

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

MCM
8332451 A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res 1993;21:2541-2547.

Domain	Description	Evalue	Bits	GA	Start	End
Ogr_Delta	Ogr/Delta-like zinc finger	0.00073	10	20.80	82	111
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.43	1	20.00	207	231
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.37	1	20.30	210	226
Sigma54_activat	Sigma-54 interaction domain	3.2E-07	21	20.20	253	342
Sigma54_activ_2	Sigma-54 interaction domain	3.9E-06	18	25.00	253	341
AAA_29	P-loop containing region of AAA domain	0.00032	11	27.00	257	276
T2SSE	Type II/IV secretion system protein	5.8E-05	13	24.90	258	287
AAA_8	P-loop containing dynein motor region D4	0.00033	11	25.60	259	311
IstB_IS21	IstB-like ATP binding protein	1.8E-05	15	24.10	261	283
MCM	MCM2/3/5 family	8.3E-09	25	25.20	261	344
AAA_2	AAA domain (Cdc48 subfamily)	0	139	20.60	262	467
AAA_22	AAA domain	4.5E-06	18	27.00	262	313
AAA_7	P-loop containing dynein motor region	4.1E-05	14	25.80	262	314
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00012	13	26.60	262	293
TIP49	TIP49 C-terminus	0.00079	9	23.80	263	298
ABC_tran	ABC transporter	4.2E-05	15	23.10	263	287
AAA_16	AAA ATPase domain	2E-05	16	32.60	263	287
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	8E-06	16	20.00	263	335
Mg_chelatase	Magnesium chelatase, subunit ChlI	4.5E-06	17	20.30	263	287
AAA_5	AAA domain (dynein-related subfamily)	2.3E-09	28	20.80	264	340
AAA_14	AAA domain	0.00011	13	27.00	264	340
AAA_18	AAA domain	0.0001	13	29.40	265	319
NACHT	NACHT domain	0.00041	11	20.40	265	284
AAA	ATPase family associated with various cellular activities (AAA)	2.7E-16	51	20.80	265	369
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.6	0	20.30	322	340
ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	1.3E-16	51	21.40	474	545